Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8JBD
DownloadVisualize
BU of 8jbd by Molmil
Crystal structure of Adenylosuccinate lyase from Thermus thermophilus HB8, TtPurB
分子名称: Adenylosuccinate lyase
著者Nemoto, N, Kawai, G, Sampei, G.
登録日2023-05-08
公開日2023-11-15
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Crystal structure of adenylosuccinate lyase from the thermophilic bacterium Thermus thermophilus HB8.
Acta Crystallogr.,Sect.F, 79, 2023
6JO3
DownloadVisualize
BU of 6jo3 by Molmil
Crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase from Thermoplasma acidophilum in complex with substrate sn-glycerol-1-phosphate
分子名称: Geranylgeranylglyceryl phosphate synthase, SN-GLYCEROL-1-PHOSPHATE
著者Nemoto, N, Miyazono, K, Tanokura, M, Yamagishi, A.
登録日2019-03-20
公開日2019-04-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase from Thermoplasma acidophilum in complex with the substrate sn-glycerol 1-phosphate.
Acta Crystallogr.,Sect.F, 75, 2019
3VVU
DownloadVisualize
BU of 3vvu by Molmil
Crystal structure of reconstructed bacterial ancestral NDK, Bac1
分子名称: Nucleoside diphosphate kinase
著者Nemoto, N, Miyazono, K, Kimura, M, Yokobori, S, Akanuma, S, Tanokura, M, Yamagishi, A.
登録日2012-07-27
公開日2013-06-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Experimental evidence for the thermophilicity of ancestral life
Proc.Natl.Acad.Sci.USA, 110, 2013
3VVT
DownloadVisualize
BU of 3vvt by Molmil
Crystal structure of reconstructed archaeal ancestral NDK, Arc1
分子名称: Nucleoside diphosphate kinase
著者Nemoto, N, Miyazono, K, Kimura, M, Yokobori, S, Akanuma, S, Tanokura, M, Yamagishi, A.
登録日2012-07-27
公開日2013-06-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Experimental evidence for the thermophilicity of ancestral life
Proc.Natl.Acad.Sci.USA, 110, 2013
1WFP
DownloadVisualize
BU of 1wfp by Molmil
Solution structure of the zf-AN1 domain from Arabiopsis thaliana F5O11.17 protein
分子名称: ZINC ION, zinc finger (AN1-like) family protein
著者Tomizawa, T, Kigawa, T, Nemoto, N, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-26
公開日2004-11-26
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the zf-AN1 domain from Arabiopsis thaliana F5O11.17 protein
To be Published
6LN3
DownloadVisualize
BU of 6ln3 by Molmil
Crystal structure of adenylate kinase from an extremophilic archaeon Aeropyrum pernix with ATP and AMP
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Shibanuma, Y, Nemoto, N, Yamamoto, N, Sampei, G, Kawai, G.
登録日2019-12-28
公開日2020-04-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of adenylate kinase from an extremophilic archaeon Aeropyrum pernix with ATP and AMP.
J.Biochem., 168, 2020
1IY3
DownloadVisualize
BU of 1iy3 by Molmil
Solution Structure of the Human lysozyme at 4 degree C
分子名称: Lysozyme
著者Kumeta, H, Miura, A, Kobashigawa, Y, Miura, K, Oka, C, Nitta, K, Nemoto, N, Tsuda, S.
登録日2002-07-15
公開日2002-07-31
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy
Biochemistry, 42, 2003
1IY4
DownloadVisualize
BU of 1iy4 by Molmil
Solution structure of the human lysozyme at 35 degree C
分子名称: Lysozyme
著者Kumeta, H, Miura, A, Kobashigawa, Y, Miura, K, Oka, C, Nitta, K, Nemoto, N, Tsuda, S.
登録日2002-07-15
公開日2002-07-31
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy
Biochemistry, 42, 2003
1IW4
DownloadVisualize
BU of 1iw4 by Molmil
Solution structure of ascidian trypsin inhibitor
分子名称: trypsin inhibitor
著者Hemmi, H, Yoshida, T, Kumazaki, T, Nemoto, N, Hasegawa, J, Nishioka, F, Kyogoku, Y, Yokosawa, H, Kobayashi, Y.
登録日2002-04-19
公開日2002-08-28
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution structure of ascidian trypsin inhibitor determined by nuclear magnetic resonance spectroscopy.
Biochemistry, 41, 2002
1IX5
DownloadVisualize
BU of 1ix5 by Molmil
Solution structure of the Methanococcus thermolithotrophicus FKBP
分子名称: FKBP
著者Suzuki, R, Nagata, K, Kawakami, M, Nemoto, N, Furutani, M, Adachi, K, Maruyama, T, Tanokura, M.
登録日2002-06-12
公開日2003-06-10
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Three-dimensional Solution Structure of an Archaeal FKBP with a Dual Function of Peptidyl Prolyl cis-trans Isomerase and Chaperone-like Activities
J.MOL.BIOL., 328, 2003
1WIC
DownloadVisualize
BU of 1wic by Molmil
Solution structure of the MSP domain of RIKEN cDNA 6030424E15
分子名称: Hypothetical Protein RIKEN cDNA 6030424E15
著者Endo, H, Asakura, K, Nemoto, N, Takasugi, K, Izumie, K, Yoshida, M, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the MSP domain of RIKEN cDNA 6030424E15
TO BE PUBLISHED
1WFH
DownloadVisualize
BU of 1wfh by Molmil
Solution structrue of the zf-AN1 domain from Arabidopsis thaliana At2g36320 protein
分子名称: ZINC ION, zinc finger (AN1-like) family protein
著者Tomizawa, T, Kigawa, T, Nemoto, N, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-26
公開日2004-11-26
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structrue of the zf-AN1 domain from Arabidopsis thaliana At2g36320 protein
To be Published
1WHD
DownloadVisualize
BU of 1whd by Molmil
Solution structure of the PDZ domain of RGS3
分子名称: regulator of G-protein signaling 3
著者Nakanishi, T, Nemoto, N, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the PDZ domain of RGS3
To be Published
1WST
DownloadVisualize
BU of 1wst by Molmil
Crystal structure of multiple substrate aminotransferase (MsAT) from Thermococcus profundus
分子名称: PYRIDOXAL-5'-PHOSPHATE, multiple substrate aminotransferase
著者Lee, W.C, Manabe, F, Nemoto, N, Tamakoshi, M, Tanokura, M, Yamagishi, A.
登録日2004-11-10
公開日2005-10-25
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of multiple substrate aminotransferase (MsAT) from Thermococcus profundus
To be Published
1C8A
DownloadVisualize
BU of 1c8a by Molmil
NMR STRUCTURE OF INTRAMOLECULAR DIMER ANTIFREEZE PROTEIN RD3, 40 SA STRUCTURES
分子名称: PROTEIN (ANTIFREEZE PROTEIN TYPE III)
著者Miura, K, Tsuda, S.
登録日2000-05-04
公開日2001-02-28
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献NMR analysis of type III antifreeze protein intramolecular dimer. Structural basis for enhanced activity.
J.Biol.Chem., 276, 2001
1C89
DownloadVisualize
BU of 1c89 by Molmil
NMR STRUCTURE OF INTRAMOLECULAR DIMER ANTIFREEZE PROTEIN RD3, 40 SA STRUCTURES
分子名称: ANTIFREEZE PROTEIN TYPE III
著者Miura, K, Tsuda, S.
登録日2000-05-04
公開日2001-02-28
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献NMR analysis of type III antifreeze protein intramolecular dimer. Structural basis for enhanced activity.
J.Biol.Chem., 276, 2001
7FG2
DownloadVisualize
BU of 7fg2 by Molmil
Minor cryo-EM structure of S protein trimer of SARS-CoV2 with K-874A VHH, composite map
分子名称: K-874A VHH, Spike glycoprotein
著者Song, C, Murata, K, Katayama, K.
登録日2021-07-25
公開日2021-09-29
最終更新日2022-03-23
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献Nasal delivery of single-domain antibody improves symptoms of SARS-CoV-2 infection in an animal model.
Plos Pathog., 17, 2021
7FG3
DownloadVisualize
BU of 7fg3 by Molmil
Major cryo-EM structure of S protein trimer of SARS-CoV2 with K-874, composite map
分子名称: K-874A VHH, Spike glycoprotein
著者Song, C, Katayama, K, Murata, K.
登録日2021-07-25
公開日2021-09-29
最終更新日2022-03-23
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Nasal delivery of single-domain antibody improves symptoms of SARS-CoV-2 infection in an animal model.
Plos Pathog., 17, 2021
7FG7
DownloadVisualize
BU of 7fg7 by Molmil
Cryo-EM structure of S protein trimer of SARS-CoV2
分子名称: Spike glycoprotein
著者Song, C, Murata, K, Katayama, K.
登録日2021-07-26
公開日2021-09-29
最終更新日2022-03-23
実験手法ELECTRON MICROSCOPY (6.9 Å)
主引用文献Nasal delivery of single-domain antibody improves symptoms of SARS-CoV-2 infection in an animal model.
Plos Pathog., 17, 2021
3NLA
DownloadVisualize
BU of 3nla by Molmil
NMR STRUCTURE OF THE N-TERMINAL DOMAIN WITH A LINKER PORTION OF ANTARCTIC EEL POUT ANTIFREEZE PROTEIN RD3, 40 STRUCTURES
分子名称: ANTIFREEZE PROTEIN RD3 TYPE III
著者Miura, K, Ohgiya, S, Hoshino, T, Nemoto, N, Hikichi, K, Tsuda, S.
登録日1998-02-24
公開日1999-02-23
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural basis for the binding of a globular antifreeze protein to ice.
Nature, 384, 1996
3RDN
DownloadVisualize
BU of 3rdn by Molmil
NMR STRUCTURE OF THE N-TERMINAL DOMAIN WITH A LINKER PORTION OF ANTARCTIC EEL POUT ANTIFREEZE PROTEIN RD3, MINIMIZED AVERAGE STRUCTURE
分子名称: ANTIFREEZE PROTEIN RD3 TYPE III
著者Miura, K, Ohgiya, S, Hoshino, T, Nemoto, N, Hikichi, K, Tsuda, S.
登録日1998-02-24
公開日1999-02-23
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural basis for the binding of a globular antifreeze protein to ice.
Nature, 384, 1996

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon