6LS8
| The monomeric structure of G80A/H81A/H82A myoglobin | 分子名称: | Myoglobin, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Nagao, S, Suda, A, Kobayashi, H, Shibata, N, Higuchi, Y, Hirota, S. | 登録日 | 2020-01-17 | 公開日 | 2020-05-06 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Thermodynamic Control of Domain Swapping by Modulating the Helical Propensity in the Hinge Region of Myoglobin. Chem Asian J, 15, 2020
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6LTM
| The dimeric structure of G80A/H81A/H82A myoglobin | 分子名称: | Myoglobin, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Nagao, S, Suda, A, Kobayashi, H, Shibata, N, Higuchi, Y, Hirota, S. | 登録日 | 2020-01-22 | 公開日 | 2020-05-06 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | Thermodynamic Control of Domain Swapping by Modulating the Helical Propensity in the Hinge Region of Myoglobin. Chem Asian J, 15, 2020
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6LTL
| The dimeric structure of G80A myoglobin | 分子名称: | Myoglobin, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Nagao, S, Suda, A, Kobayashi, H, Shibata, N, Higuchi, Y, Hirota, S. | 登録日 | 2020-01-22 | 公開日 | 2020-05-06 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.25 Å) | 主引用文献 | Thermodynamic Control of Domain Swapping by Modulating the Helical Propensity in the Hinge Region of Myoglobin. Chem Asian J, 15, 2020
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3X39
| Domain-swapped dimer of Pseudomonas aeruginosa cytochrome c551 | 分子名称: | Cytochrome c-551, HEME C | 著者 | Nagao, S, Ueda, M, Osuka, H, Komori, H, Kamikubo, H, Kataoka, M, Higuchi, Y, Hirota, S. | 登録日 | 2015-01-16 | 公開日 | 2015-04-22 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Domain-Swapped Dimer of Pseudomonas aeruginosa Cytochrome c551: Structural Insights into Domain Swapping of Cytochrome c Family Proteins Plos One, 10, 2015
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3VM9
| Dimeric horse myoglobin | 分子名称: | Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Nagao, S, Osuka, H, Yamada, T, Uni, T, Shomura, Y, Imai, K, Higuchi, Y, Hirota, S. | 登録日 | 2011-12-09 | 公開日 | 2012-09-12 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.05 Å) | 主引用文献 | Structural and oxygen binding properties of dimeric horse myoglobin Dalton Trans, 41, 2012
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7DGJ
| The dimeric structure of K78H/G80A/H82A myoglobin | 分子名称: | Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S. | 登録日 | 2020-11-12 | 公開日 | 2021-02-17 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Rational design of metal-binding sites in domain-swapped myoglobin dimers. J.Inorg.Biochem., 217, 2021
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7DGM
| The dimeric structure of K79H/G80A/H81A myoglobin | 分子名称: | Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S. | 登録日 | 2020-11-12 | 公開日 | 2021-02-17 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.62 Å) | 主引用文献 | Rational design of metal-binding sites in domain-swapped myoglobin dimers. J.Inorg.Biochem., 217, 2021
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7DGL
| The Ni-bound dimeric structure of K78H/G80A/H82A myoglobin | 分子名称: | Myoglobin, NICKEL (II) ION, OXYGEN ATOM, ... | 著者 | Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S. | 登録日 | 2020-11-12 | 公開日 | 2021-02-17 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.91 Å) | 主引用文献 | Rational design of metal-binding sites in domain-swapped myoglobin dimers. J.Inorg.Biochem., 217, 2021
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7DGO
| The Zn-bound dimeric structure of K79H/G80A/H81A myoglobin | 分子名称: | Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE, ... | 著者 | Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S. | 登録日 | 2020-11-12 | 公開日 | 2021-02-17 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Rational design of metal-binding sites in domain-swapped myoglobin dimers. J.Inorg.Biochem., 217, 2021
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7DGK
| The Co-bound dimeric structure of K78H/G80A/H82A myoglobin | 分子名称: | COBALT (II) ION, Myoglobin, OXYGEN ATOM, ... | 著者 | Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S. | 登録日 | 2020-11-12 | 公開日 | 2021-02-17 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Rational design of metal-binding sites in domain-swapped myoglobin dimers. J.Inorg.Biochem., 217, 2021
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7DGN
| The Co-bound dimeric structure of K79H/G80A/H81A myoglobin | 分子名称: | COBALT (II) ION, Myoglobin, OXYGEN ATOM, ... | 著者 | Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S. | 登録日 | 2020-11-12 | 公開日 | 2021-02-17 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | 主引用文献 | Rational design of metal-binding sites in domain-swapped myoglobin dimers. J.Inorg.Biochem., 217, 2021
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5XED
| Heterodimer constructed from M61A PA cyt c551-HT cyt c552 and HT cyt c552-PA cyt c551 chimeric proteins | 分子名称: | Cytochrome c-551,Cytochrome c-552, Cytochrome c-552,Cytochrome c-551, HEME C | 著者 | Zhang, M, Nakanishi, T, Yamanaka, M, Nagao, S, Yanagisawa, S, Shomura, Y, Shibata, N, Ogura, T, Higuchi, Y, Hirota, S. | 登録日 | 2017-04-04 | 公開日 | 2017-08-09 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins. Chembiochem, 18, 2017
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6L1V
| Domain-swapped Alcaligenes xylosoxidans azurin dimer | 分子名称: | Azurin-1, COPPER (II) ION | 著者 | Cahyono, R.N, Yamanaka, M, Nagao, S, Shibata, N, Higuchi, Y, Hirota, S. | 登録日 | 2019-09-30 | 公開日 | 2020-02-05 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | 3D domain swapping of azurin from Alcaligenes xylosoxidans. Metallomics, 12, 2020
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5GYR
| Tetrameric Allochromatium vinosum cytochrome c' | 分子名称: | Cytochrome c', HEME C | 著者 | Yamanaka, M, Hoshizumi, M, Nagao, S, Nakayama, R, Shibata, N, Higuchi, Y, Hirota, S. | 登録日 | 2016-09-23 | 公開日 | 2017-02-08 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Formation and carbon monoxide-dependent dissociation of Allochromatium vinosum cytochrome c' oligomers using domain-swapped dimers Protein Sci., 26, 2017
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4D7Y
| Crystal structure of mouse C1QL1 globular domain | 分子名称: | C1Q-RELATED FACTOR, CADMIUM ION, CHLORIDE ION, ... | 著者 | Kakegawa, W, Mitakidis, N, Miura, E, Abe, M, Matsuda, K, Takeo, Y, Kohda, K, Motohashi, J, Takahashi, A, Nagao, S, Muramatsu, S, Watanabe, M, Sakimura, K, Aricescu, A.R, Yuzaki, M. | 登録日 | 2014-12-01 | 公開日 | 2015-01-28 | 最終更新日 | 2023-12-20 | 実験手法 | X-RAY DIFFRACTION (1.44 Å) | 主引用文献 | Anterograde C1Ql1 Signaling is Required in Order to Determine and Maintain a Single-Winner Climbing Fiber in the Mouse Cerebellum Neuron, 85, 2015
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5XEC
| Heterodimer constructed from PA cyt c551-HT cyt c552 and HT cyt c552-PA cyt c551 chimeric proteins | 分子名称: | Cytochrome c-551,Cytochrome c-552, Cytochrome c-552,Cytochrome c-551, HEME C | 著者 | Zhang, M, Nakanishi, T, Yamanaka, M, Nagao, S, Yanagisawa, S, Shomura, Y, Shibata, N, Ogura, T, Higuchi, Y, Hirota, S. | 登録日 | 2017-04-04 | 公開日 | 2017-08-09 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.1 Å) | 主引用文献 | Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins. Chembiochem, 18, 2017
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5Z25
| Trimeric Alpha-Helix-Inserted Circular Permutant of Cytochrome c555 | 分子名称: | Cytochrome c552, HEME C, TETRAETHYLENE GLYCOL | 著者 | Oda, A, Nagao, S, Yamanaka, M, Ueda, I, Shibata, N, Higuchi, Y, Hirota, S. | 登録日 | 2017-12-28 | 公開日 | 2018-03-07 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Construction of a Triangle-Shaped Trimer and a Tetrahedron Using an alpha-Helix-Inserted Circular Permutant of Cytochrome c555. Chem Asian J, 13, 2018
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4ZID
| Dimeric Hydrogenobacter thermophilus cytochrome c552 obtained from Escherichia coli | 分子名称: | Cytochrome c-552, HEME C | 著者 | Hayashi, Y, Yamanaka, M, Nagao, S, Komori, H, Higuchi, Y, Hirota, S. | 登録日 | 2015-04-28 | 公開日 | 2016-02-10 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Domain swapping oligomerization of thermostable c-type cytochrome in E. coli cells Sci Rep, 6, 2016
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5AWI
| Domain-swapped cytochrome cb562 dimer | 分子名称: | HEME C, SULFATE ION, Soluble cytochrome b562, ... | 著者 | Miyamoto, T, Kuribayashi, M, Nagao, S, Shomura, Y, Higuchi, Y, Hirota, S. | 登録日 | 2015-07-03 | 公開日 | 2015-10-21 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Domain-swapped cytochrome cb562 dimer and its nanocage encapsulating a Zn-SO4 cluster in the internal cavity Chem Sci, 2015
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5AUR
| Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at N-terminal region | 分子名称: | Cytochrome c-552, HEME C, IODIDE ION | 著者 | Ren, C, Nagao, S, Yamanaka, M, Kamikubo, H, Komori, H, Shomura, Y, Higuchi, Y, Hirota, S. | 登録日 | 2015-06-08 | 公開日 | 2015-10-21 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.26 Å) | 主引用文献 | Oligomerization enhancement and two domain swapping mode detection for thermostable cytochrome c552via the elongation of the major hinge loop. Mol Biosyst, 11, 2015
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5AUS
| Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at C-terminal region | 分子名称: | Cytochrome c-552, HEME C | 著者 | Ren, C, Nagao, S, Yamanaka, M, Komori, H, Shomura, Y, Higuchi, Y, Hirota, S. | 登録日 | 2015-06-08 | 公開日 | 2015-10-21 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | Oligomerization enhancement and two domain swapping mode detection for thermostable cytochrome c552via the elongation of the major hinge loop. Mol Biosyst, 11, 2015
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6K7C
| Dimeric Shewanella violacea cytochrome c5 | 分子名称: | HEME C, NITRATE ION, Soluble cytochrome cA | 著者 | Yang, H, Yamanaka, M, Nagao, S, Yasuhara, K, Shibata, N, Higuchi, Y, Hirota, S. | 登録日 | 2019-06-07 | 公開日 | 2019-09-04 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.15 Å) | 主引用文献 | Protein surface charge effect on 3D domain swapping in cells for c-type cytochromes. Biochim Biophys Acta Proteins Proteom, 1867, 2019
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3VYM
| Dimeric Hydrogenobacter thermophilus cytochrome c552 | 分子名称: | Cytochrome c-552, HEME C | 著者 | Hayashi, Y, Nagao, S, Osuka, H, Komori, H, Higuchi, Y, Hirota, S. | 登録日 | 2012-09-28 | 公開日 | 2012-11-07 | 最終更新日 | 2017-11-22 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Domain Swapping of the Heme and N-Terminal alpha-Helix in Hydrogenobacter thermophilus Cytochrome c(552) Dimer Biochemistry, 51, 2012
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3WUI
| Dimeric horse cytochrome c formed by refolding from molten globule state | 分子名称: | Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ... | 著者 | Deshpande, M.S, Parui, P.P, Kamikubo, H, Yamanaka, M, Nagao, S, Komori, H, Kataoka, M, Higuchi, Y, Hirota, S. | 登録日 | 2014-04-25 | 公開日 | 2014-07-16 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Formation of domain-swapped oligomer of cytochrome C from its molten globule state oligomer. Biochemistry, 53, 2014
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3WC8
| Dimeric horse cytochrome c obtained by refolding with desalting method | 分子名称: | Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ... | 著者 | Parui, P.P, Deshpande, M.S, Nagao, S, Kamikubo, H, Komori, H, Higuchi, Y, Kataoka, M, Hirota, S. | 登録日 | 2013-05-25 | 公開日 | 2013-12-11 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Formation of Oligomeric Cytochrome c during Folding by Intermolecular Hydrophobic Interaction between N- and C-Terminal alpha-Helices Biochemistry, 52, 2013
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