3D7A
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7WAB
| Crystal structure of the prolyl endoprotease, PEP, from Aspergillus niger | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COMPASS (Complex proteins associated with Set1p) component shg1 family protein, ... | 著者 | Miyazono, K, Kubota, K, Takahashi, K, Tanokura, M. | 登録日 | 2021-12-14 | 公開日 | 2022-01-12 | 最終更新日 | 2022-02-16 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Crystal structure and substrate recognition mechanism of the prolyl endoprotease PEP from Aspergillus niger. Biochem.Biophys.Res.Commun., 591, 2022
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5XOD
| Crystal structure of human Smad2-Ski complex | 分子名称: | Mothers against decapentaplegic homolog 2, Ski oncogene | 著者 | Miyazono, K, Moriwaki, S, Ito, T, Tanokura, M. | 登録日 | 2017-05-27 | 公開日 | 2018-03-28 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.851 Å) | 主引用文献 | Hydrophobic patches on SMAD2 and SMAD3 determine selective binding to cofactors Sci Signal, 11, 2018
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5XOC
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5ZB8
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5ZOJ
| Crystal structure of human SMAD2-MAN1 complex | 分子名称: | Inner nuclear membrane protein Man1, Mothers against decapentaplegic homolog 2 | 著者 | Miyazono, K, Ohno, Y, Ito, T, Tanokura, M. | 登録日 | 2018-04-13 | 公開日 | 2018-10-10 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (2.794 Å) | 主引用文献 | Structural basis for receptor-regulated SMAD recognition by MAN1 Nucleic Acids Res., 46, 2018
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5ZOK
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6L2N
| Crystal structure of the R.PabI(Y68F-K154A)-dsDNA(GTAC-3bp-GTAC) complex | 分子名称: | DNA (5'-D(*TP*CP*AP*GP*CP*AP*GP*TP*AP*CP*TP*AP*AP*GP*TP*AP*CP*TP*GP*CP*TP*GP*A)-3'), RE_R_Pab1 domain-containing protein | 著者 | Miyazono, K, Wang, D, Ito, T, Tanokura, M. | 登録日 | 2019-10-05 | 公開日 | 2020-03-18 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.45 Å) | 主引用文献 | Distortion of double-stranded DNA structure by the binding of the restriction DNA glycosylase R.PabI. Nucleic Acids Res., 48, 2020
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6L2O
| Crystal structure of the R.PabI(Y68F-K154A)-dsDNA(GTAC-5bp-GTAC) complex | 分子名称: | DNA (5'-D(*CP*A*GP*CP*AP*GP*TP*AP*CP*TP*TP*AP*AP*AP*GP*TP*AP*CP*TP*GP*CP*TP*G)-3'), RE_R_Pab1 domain-containing protein | 著者 | Miyazono, K, Wang, D, Ito, T, Tanokura, M. | 登録日 | 2019-10-05 | 公開日 | 2020-03-18 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Distortion of double-stranded DNA structure by the binding of the restriction DNA glycosylase R.PabI. Nucleic Acids Res., 48, 2020
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6M64
| Crystal structure of SMAD2 in complex with CBP | 分子名称: | CBP, Mothers against decapentaplegic homolog 2 | 著者 | Miyazono, K, Ito, T, Wada, H, Tanokura, M. | 登録日 | 2020-03-13 | 公開日 | 2020-11-25 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | 主引用文献 | Structural basis for transcriptional coactivator recognition by SMAD2 in TGF-beta signaling. Sci.Signal., 13, 2020
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6M3L
| Crystal structure of the R.PabI(Y68F-K154A)-dsDNA(nonspecific) complex | 分子名称: | DNA (5'-D(*CP*GP*CP*AP*TP*CP*GP*AP*TP*TP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*GP*CP*G)-3'), RE_R_Pab1 domain-containing protein | 著者 | Miyazono, K, Wang, D, Ito, T, Tanokura, M. | 登録日 | 2020-03-04 | 公開日 | 2020-03-18 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | Distortion of double-stranded DNA structure by the binding of the restriction DNA glycosylase R.PabI. Nucleic Acids Res., 48, 2020
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7CFA
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7CO1
| Crystal structure of SMAD2 in complex with wild-type CBP | 分子名称: | CREB-binding protein, Mothers against decapentaplegic homolog 2 | 著者 | Miyazono, K, Wada, H, Ito, T, Tanokura, M. | 登録日 | 2020-08-03 | 公開日 | 2020-11-25 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (3.3 Å) | 主引用文献 | Structural basis for transcriptional coactivator recognition by SMAD2 in TGF-beta signaling. Sci.Signal., 13, 2020
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5IFF
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6JO3
| Crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase from Thermoplasma acidophilum in complex with substrate sn-glycerol-1-phosphate | 分子名称: | Geranylgeranylglyceryl phosphate synthase, SN-GLYCEROL-1-PHOSPHATE | 著者 | Nemoto, N, Miyazono, K, Tanokura, M, Yamagishi, A. | 登録日 | 2019-03-20 | 公開日 | 2019-04-03 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | 主引用文献 | Crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase from Thermoplasma acidophilum in complex with the substrate sn-glycerol 1-phosphate. Acta Crystallogr.,Sect.F, 75, 2019
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5WVU
| Crystal structure of carboxypeptidase from Thermus thermophilus | 分子名称: | GLYCEROL, Thermostable carboxypeptidase 1, ZINC ION | 著者 | Okai, M, Nagata, K, Tanokura, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2016-12-29 | 公開日 | 2017-02-22 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Insight into the transition between the open and closed conformations of Thermus thermophilus carboxypeptidase. Biochem. Biophys. Res. Commun., 484, 2017
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