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6KPO
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Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris D154N/E156Q mutant in complex with fucosyl-N-acetylglucosamine-Asn
分子名称: ASPARAGINE, Chitinase, DI(HYDROXYETHYL)ETHER, ...
著者Seki, H, Arakawa, T, Yamada, C, Takegawa, K, Fushinobu, S.
登録日2019-08-15
公開日2019-10-02
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献Structural basis for the specific cleavage of core-fucosylatedN-glycans by endo-beta-N-acetylglucosaminidase from the fungusCordyceps militaris.
J.Biol.Chem., 294, 2019
6KPN
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Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris D154N/E156Q mutant in complex with fucosyl-N-acetylglucosamine
分子名称: Chitinase, alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Seki, H, Arakawa, T, Yamada, C, Takegawa, K, Fushinobu, S.
登録日2019-08-15
公開日2019-10-02
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis for the specific cleavage of core-fucosylatedN-glycans by endo-beta-N-acetylglucosaminidase from the fungusCordyceps militaris.
J.Biol.Chem., 294, 2019
6KPL
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Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris in apo form
分子名称: Chitinase, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL
著者Seki, H, Arakawa, T, Yamada, C, Takegawa, K, Fushinobu, S.
登録日2019-08-15
公開日2019-10-02
最終更新日2019-11-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural basis for the specific cleavage of core-fucosylatedN-glycans by endo-beta-N-acetylglucosaminidase from the fungusCordyceps militaris.
J.Biol.Chem., 294, 2019
6KPM
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BU of 6kpm by Molmil
Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris in complex with L-fucose
分子名称: Chitinase, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL, ...
著者Seki, H, Arakawa, T, Yamada, C, Takegawa, K, Fushinobu, S.
登録日2019-08-15
公開日2019-10-02
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for the specific cleavage of core-fucosylatedN-glycans by endo-beta-N-acetylglucosaminidase from the fungusCordyceps militaris.
J.Biol.Chem., 294, 2019
6JGH
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BU of 6jgh by Molmil
Crystal structure of the F99S/M153T/V163A/T203I variant of GFP at 0.94 A
分子名称: CHLORIDE ION, Green fluorescent protein
著者Eki, H, Tai, Y, Takaba, K, Hanazono, Y, Miki, K, Takeda, K.
登録日2019-02-14
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (0.94 Å)
主引用文献Subatomic resolution X-ray structures of green fluorescent protein.
Iucrj, 6, 2019
6M5B
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BU of 6m5b by Molmil
X-ray crystal structure of cyclic-PIP and DNA complex in a reverse binding orientation
分子名称: 1,2-ETHANEDIOL, 4-[[4-[(4-azanyl-1-methyl-pyrrol-2-yl)carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]-~{N}-[2-[[(3~{S})-3-azanyl-4-oxidanylidene-butyl]carbamoyl]-1-methyl-imidazol-4-yl]-1-methyl-imidazole-2-carboxamide, DNA (5'-D(*CP*(CBR)P*AP*GP*GP*CP*CP*TP*GP*G)-3'), ...
著者Abe, K, Hirose, Y, Eki, H, Takeda, K, Bando, T, Endo, M, Sugiyama, H.
登録日2020-03-10
公開日2020-06-24
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.501 Å)
主引用文献X-ray Crystal Structure of a Cyclic-PIP-DNA Complex in the Reverse-Binding Orientation.
J.Am.Chem.Soc., 142, 2020
1YZ5
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BU of 1yz5 by Molmil
The crystal structure of 14-3-3-sigma at 2.8 angstrom resolution
分子名称: 14-3-3 protein sigma
著者Benzinger, A, Popowicz, G.M, Holak, T.A, Hermeking, H.
登録日2005-02-28
公開日2005-03-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The crystal structure of the non-liganded 14-3-3sigma protein: insights into determinants of isoform specific ligand binding and dimerization.
Cell Res., 15, 2005
1MBQ
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BU of 1mbq by Molmil
Anionic Trypsin from Pacific Chum Salmon
分子名称: BENZAMIDINE, CALCIUM ION, Trypsin
著者Toyota, E, Ng, K.K.S, Kuninaga, S, Sekizaki, H, Itoh, K, Tanizawa, K, James, M.N.G.
登録日2002-08-03
公開日2002-12-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure and Nucleotide Sequence of an Anionic Trypsin from Chum Salmon (Oncorhynchus keta) in Comparison with Atlantic Salmon (Salmo salar) and Bovine Trypsin
J.Mol.Biol., 324, 2002
5WQW
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BU of 5wqw by Molmil
X-ray structure of catalytic domain of autolysin from Clostridium perfringens
分子名称: 1,2-ETHANEDIOL, N-acetylglucosaminidase
著者Tamai, E, Sekiya, H, Goda, E, Makihata, N, Maki, J, Yoshida, H, Kamitori, S.
登録日2016-11-29
公開日2016-12-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Structural and biochemical characterization of the Clostridium perfringens autolysin catalytic domain
FEBS Lett., 591, 2017
2YT5
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BU of 2yt5 by Molmil
Solution structure of the PHD domain of Metal-response element-binding transcription factor 2
分子名称: Metal-response element-binding transcription factor 2, ZINC ION
著者Masuda, K, Muto, Y, Isono, K, Watanabe, S, Harada, T, Kigawa, T, Koseki, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-05
公開日2008-04-15
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the PHD domain of Metal-response element-binding transcription factor 2
To be Published
1G3B
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BU of 1g3b by Molmil
BOVINE BETA-TRYPSIN BOUND TO META-AMIDINO SCHIFF BASE MAGNESIUM(II) CHELATE
分子名称: 2-(5-CARBAMIMIDOYL-2-HYDROXY-BENZYLAMINO)-PROPIONIC ACID, BETA-TRYPSIN, CALCIUM ION, ...
著者Toyota, E, Ng, K.K.S, Sekizaki, H, Itoh, K, Tanizawa, K, James, M.N.G.
登録日2000-10-23
公開日2001-01-17
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献X-ray crystallographic analyses of complexes between bovine beta-trypsin and Schiff base copper(II) or iron(III) chelates.
J.Mol.Biol., 305, 2001
1G3D
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BU of 1g3d by Molmil
BOVINE BETA-TRYPSIN BOUND TO META-AMIDINO SCHIFF BASE COPPER (II) CHELATE
分子名称: 2-(5-CARBAMIMIDOYL-2-HYDROXY-BENZYLAMINO)-PROPIONIC ACID, BETA-TRYPSIN, CALCIUM ION, ...
著者Toyota, E, Ng, K.K.S, Sekizaki, H, Itoh, K, Tanizawa, K, James, M.N.G.
登録日2000-10-23
公開日2001-01-17
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献X-ray crystallographic analyses of complexes between bovine beta-trypsin and Schiff base copper(II) or iron(III) chelates.
J.Mol.Biol., 305, 2001
1G3C
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BU of 1g3c by Molmil
BOVINE BETA-TRYPSIN BOUND TO PARA-AMIDINO SCHIFF BASE IRON(III) CHELATE
分子名称: 2-(4-CARBAMIMIDOYL-2-HYDROXY-BENZYLAMINO)-PROPIONIC ACID, BETA-TRYPSIN, CALCIUM ION, ...
著者Toyota, E, Ng, K.K.S, Sekizaki, H, Itoh, K, Tanizawa, K, James, M.N.G.
登録日2000-10-23
公開日2001-01-17
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献X-ray crystallographic analyses of complexes between bovine beta-trypsin and Schiff base copper(II) or iron(III) chelates.
J.Mol.Biol., 305, 2001
1G3E
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BU of 1g3e by Molmil
BOVINE BETA-TRYPSIN BOUND TO PARA-AMIDINO SCHIFF-BASE COPPER (II) CHELATE
分子名称: 2-(4-CARBAMIMIDOYL-2-HYDROXY-BENZYLAMINO)-PROPIONIC ACID, BETA-TRYPSIN, CALCIUM ION, ...
著者Toyota, E, Ng, K.K.S, Sekizaki, H, Itoh, K, Tanizawa, K, James, M.N.G.
登録日2000-10-23
公開日2001-01-17
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献X-ray crystallographic analyses of complexes between bovine beta-trypsin and Schiff base copper(II) or iron(III) chelates.
J.Mol.Biol., 305, 2001
2EQJ
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BU of 2eqj by Molmil
Solution structure of the TUDOR domain of Metal-response element-binding transcription factor 2
分子名称: Metal-response element-binding transcription factor 2
著者Dang, W, Muto, Y, Isono, K, Watanabe, S, Tarada, T, Kigawa, T, Koseki, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-30
公開日2008-04-08
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the TUDOR domain of Metal-response element-binding transcription factor 2
To be Published
7F5I
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BU of 7f5i by Molmil
X-ray structure of Clostridium perfringens-specific amidase endolysin
分子名称: GLUTAMIC ACID, SODIUM ION, ZINC ION, ...
著者Kamitori, S, Tamai, E.
登録日2021-06-22
公開日2022-05-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural and biochemical characterization of the Clostridium perfringens-specific Zn 2+ -dependent amidase endolysin, Psa, catalytic domain.
Biochem.Biophys.Res.Commun., 576, 2021
8YXK
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BU of 8yxk by Molmil
X-ray structure of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
分子名称: Phage cell wall hydrolase
著者Kamitori, S, Tamai, E.
登録日2024-04-02
公開日2024-05-15
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献X-ray structure and mutagenesis analyses of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Biochem.Biophys.Res.Commun., 715, 2024
8YXN
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BU of 8yxn by Molmil
X-ray structure of Clostridium perfringens autolysin catalytic domain in the P1 form
分子名称: Cell surface protein
著者Kamitori, S, Tamai, E.
登録日2024-04-02
公開日2024-05-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献X-ray structure and mutagenesis analyses of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Biochem.Biophys.Res.Commun., 715, 2024
7CFL
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BU of 7cfl by Molmil
X-ray structure of autolysin Acd24020 catalytic domain from Clostridium difficile
分子名称: CITRATE ANION, Putative cell wall hydrolase phosphatase-associated protein
著者Kamitori, S, Tamai, E.
登録日2020-06-26
公開日2020-11-25
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Structural and biochemical characterizations of the novel autolysin Acd24020 from Clostridioides difficile and its full-function catalytic domain as a lytic enzyme.
Mol.Microbiol., 115, 2021
6JGJ
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BU of 6jgj by Molmil
Crystal structure of the F99S/M153T/V163A/E222Q variant of GFP at 0.78 A
分子名称: Green fluorescent protein, MAGNESIUM ION
著者Takaba, K, Tai, Y, Hanazono, Y, Miki, K, Takeda, K.
登録日2019-02-14
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (0.78 Å)
主引用文献Subatomic resolution X-ray structures of green fluorescent protein.
Iucrj, 6, 2019
6JGI
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BU of 6jgi by Molmil
Crystal structure of the S65T/F99S/M153T/V163A variant of GFP at 0.85 A
分子名称: Green fluorescent protein
著者Tai, Y, Takaba, K, Hanazono, Y, Miki, K, Takeda, K.
登録日2019-02-14
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (0.85 Å)
主引用文献Subatomic resolution X-ray structures of green fluorescent protein.
Iucrj, 6, 2019
6IXZ
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BU of 6ixz by Molmil
X-ray structure of sortase C from Clostridium perfringens SM101
分子名称: Sortase family protein
著者Kamitori, S, Tamai, E.
登録日2018-12-12
公開日2019-08-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
4KRT
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BU of 4krt by Molmil
X-ray structure of endolysin from clostridium perfringens phage phiSM101
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, Autolytic lysozyme, ...
著者Kamitori, S, Yoshida, H.
登録日2013-05-17
公開日2014-04-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens.
Mol.Microbiol., 92, 2014
4KRU
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BU of 4kru by Molmil
X-ray structure of catalytic domain of endolysin from clostridium perfringens phage phiSM101
分子名称: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Autolytic lysozyme, ...
著者Kamitori, S, Yoshida, H.
登録日2013-05-17
公開日2014-04-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens.
Mol.Microbiol., 92, 2014
5B23
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X-ray Structure of Clostridium Perfringens Sortase B
分子名称: Uncharacterized protein Sortase B
著者Kamitori, S, Yoshida, H, Tamai, E.
登録日2015-12-28
公開日2016-12-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献X-ray structure of Clostridium perfringens sortase B cysteine transpeptidase
Biochem. Biophys. Res. Commun., 493, 2017

 

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