Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8BNA
DownloadVisualize
BU of 8bna by Molmil
BINDING OF HOECHST 33258 TO THE MINOR GROOVE OF B-DNA
分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
著者Pjura, P.E, Grzeskowiak, K, Dickerson, R.E.
登録日1986-08-29
公開日1987-01-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Binding of Hoechst 33258 to the minor groove of B-DNA.
J.Mol.Biol., 197, 1987
5BNA
DownloadVisualize
BU of 5bna by Molmil
THE PRIMARY MODE OF BINDING OF CISPLATIN TO A B-DNA DODECAMER: C-G-C-G-A-A-T-T-C-G-C-G
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), PLATINUM TRIAMINE ION
著者Wing, R.M, Pjura, P, Drew, H.R, Dickerson, R.E.
登録日1983-08-22
公開日1983-11-02
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The primary mode of binding of cisplatin to a B-DNA dodecamer: C-G-C-G-A-A-T-T-C-G-C-G
EMBO J., 3, 1984
4BNA
DownloadVisualize
BU of 4bna by Molmil
REVERSIBLE BENDING AND HELIX GEOMETRY IN A B-DNA DODECAMER: CGCGAATTBRCGCG
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3')
著者Kopka, M.L, Fratini, A.V, Dickerson, R.E.
登録日1982-02-16
公開日1982-04-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG.
J.Biol.Chem., 257, 1982
3BNA
DownloadVisualize
BU of 3bna by Molmil
REVERSIBLE BENDING AND HELIX GEOMETRY IN A B-DNA DODECAMER: CGCGAATTBRCGCG
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3')
著者Kopka, M.L, Fratini, A.V, Dickerson, R.E.
登録日1982-02-16
公開日1982-04-15
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG.
J.Biol.Chem., 257, 1982
7BNA
DownloadVisualize
BU of 7bna by Molmil
ANISOTROPIC THERMAL-PARAMETER REFINEMENT OF THE DNA DODECAMER CGCGAATTCGCG BY THE SEGMENTED RIGID-BODY METHOD
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
著者Holbrook, S.R, Dickerson, R.E, Kim, S.-H.
登録日1985-01-07
公開日1985-07-17
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Anisotropic Thermal-Parameter Refinement of the DNA Dodecamer CGCGAATTCGCG by the Segmented Rigid-Body Method
Acta Crystallogr.,Sect.B, 41, 1985
6BNA
DownloadVisualize
BU of 6bna by Molmil
BINDING OF AN ANTITUMOR DRUG TO DNA. NETROPSIN AND C-G-C-G-A-A-T-T-BRC-G-C-G
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), NETROPSIN
著者Kopka, M.L, Yoon, C, Goodsell, D, Pjura, P, Dickerson, R.E.
登録日1984-08-30
公開日1984-10-29
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G.
J.Mol.Biol., 183, 1985
2BNA
DownloadVisualize
BU of 2bna by Molmil
STRUCTURE OF A B-DNA DODECAMER AT 16 KELVIN
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
著者Drew, H.R, Samson, S, Dickerson, R.E.
登録日1981-11-12
公開日1982-02-03
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of a B-DNA dodecamer at 16 K.
Proc.Natl.Acad.Sci.USA, 79, 1982
451C
DownloadVisualize
BU of 451c by Molmil
STRUCTURE OF CYTOCHROME C551 FROM P. AERUGINOSA REFINED AT 1.6 ANGSTROMS RESOLUTION AND COMPARISON OF THE TWO REDOX FORMS
分子名称: CYTOCHROME C551, PROTOPORPHYRIN IX CONTAINING FE
著者Matsuura, Y, Takano, T, Dickerson, R.E.
登録日1981-07-20
公開日1981-10-02
最終更新日2017-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of cytochrome c551 from Pseudomonas aeruginosa refined at 1.6 A resolution and comparison of the two redox forms.
J.Mol.Biol., 156, 1982
351C
DownloadVisualize
BU of 351c by Molmil
STRUCTURE OF CYTOCHROME C551 FROM P. AERUGINOSA REFINED AT 1.6 ANGSTROMS RESOLUTION AND COMPARISON OF THE TWO REDOX FORMS
分子名称: CYTOCHROME C551, PROTOPORPHYRIN IX CONTAINING FE
著者Matsuura, Y, Takano, T, Dickerson, R.E.
登録日1981-07-20
公開日1981-10-02
最終更新日2017-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of cytochrome c551 from Pseudomonas aeruginosa refined at 1.6 A resolution and comparison of the two redox forms.
J.Mol.Biol., 156, 1982
3DNB
DownloadVisualize
BU of 3dnb by Molmil
HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER
分子名称: DNA (5'-D(*CP*CP*AP*AP*GP*AP*TP*TP*GP*G)-3'), MAGNESIUM ION
著者Prive, G.G, Dickerson, R.E.
登録日1988-03-18
公開日1989-01-09
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G.
J.Mol.Biol., 217, 1991
5DNB
DownloadVisualize
BU of 5dnb by Molmil
STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-G-T-T-G-G AND COMPARISON WITH ISOMORPHOUS DECAMERS C-C-A-A-G-A-T-T-G-G AND C-C-A-G-G-C-C-T-G-G
分子名称: DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'), MAGNESIUM ION
著者Prive, G.G, Yanagi, K, Dickerson, R.E.
登録日1990-03-22
公開日1991-10-15
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G.
J.Mol.Biol., 217, 1991
1ZG5
DownloadVisualize
BU of 1zg5 by Molmil
NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site
分子名称: 5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3', Nitrate/nitrite response regulator protein narL, SULFATE ION
著者Maris, A.E, Kaczor-Grzeskowiak, M, Ma, Z, Kopka, M.L, Gunsalus, R.P, Dickerson, R.E.
登録日2005-04-20
公開日2005-11-22
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Primary and Secondary Modes of DNA Recognition by the NarL Two-Component Response Regulator.
Biochemistry, 44, 2005
1ZG1
DownloadVisualize
BU of 1zg1 by Molmil
NarL complexed to nirB promoter non-palindromic tail-to-tail DNA site
分子名称: 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3', Nitrate/nitrite response regulator protein narL, ...
著者Maris, A.E, Kaczor-Grzeskowiak, M, Ma, Z, Kopka, M.L, Gunsalus, R.P, Dickerson, R.E.
登録日2005-04-20
公開日2005-11-22
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Primary and Secondary Modes of DNA Recognition by the NarL Two-Component Response Regulator.
Biochemistry, 44, 2005
1HCR
DownloadVisualize
BU of 1hcr by Molmil
HIN RECOMBINASE BOUND TO DNA: THE ORIGIN OF SPECIFICITY IN MAJOR AND MINOR GROOVE INTERACTIONS
分子名称: DNA (5'-D(*TP*CP*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3'), PROTEIN (HIN RECOMBINASE)
著者Feng, J.-A, Johnson, R.C, Dickerson, R.E.
登録日1993-12-17
公開日1994-04-30
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Hin recombinase bound to DNA: the origin of specificity in major and minor groove interactions.
Science, 263, 1994
1SK5
DownloadVisualize
BU of 1sk5 by Molmil
The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition
分子名称: 5'-D(*CP*TP*TP*TP*TP*AP*AP*AP*AP*G)-3', CALCIUM ION
著者Han, G.W, Langs, D, Kopka, M.L, Dickerson, R.E.
登録日2004-03-04
公開日2005-06-21
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (0.89 Å)
主引用文献The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition
To be Published
4FIS
DownloadVisualize
BU of 4fis by Molmil
THE MOLECULAR STRUCTURE OF WILD-TYPE AND A MUTANT FIS PROTEIN: RELATIONSHIP BETWEEN MUTATIONAL CHANGES AND RECOMBINATIONAL ENHANCER FUNCTION OR DNA BINDING
分子名称: FACTOR FOR INVERSION STIMULATION (FIS)
著者Yuan, H.S, Finkel, S.E, Feng, J.-A, Johnson, R.C, Dickerson, R.E.
登録日1991-08-12
公開日1993-10-31
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding.
Proc.Natl.Acad.Sci.USA, 88, 1991
455D
DownloadVisualize
BU of 455d by Molmil
A6/A18 INTER-STRAND DITHIOBIS(PROPANE)-CROSSLINKED DODECAMER (CGCGAATTCGCG)2
分子名称: DITHIOBIS-(PROPANE), DNA (5'-D(*CP*GP*CP*GP*AP*(SSP)AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
著者Chiu, T.K, Kaczor-Grzeskowiak, M, Dickerson, R.E.
登録日1999-03-04
公開日1999-10-08
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G.
J.Mol.Biol., 292, 1999
1PJG
DownloadVisualize
BU of 1pjg by Molmil
RNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTG
分子名称: 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', CALCIUM ION
著者Kopka, M.L, Lavelle, L, Han, G.W, Ng, H.-L, Dickerson, R.E.
登録日2003-06-02
公開日2003-12-09
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献An unusual sugar conformation in the structure of an RNA/DNA decamer of the polypurine tract may affect recognition by RNase H.
J.Mol.Biol., 334, 2003
1PJO
DownloadVisualize
BU of 1pjo by Molmil
Crystal Structure of an RNA/DNA hybrid of HIV-1 PPT
分子名称: 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', MAGNESIUM ION
著者Kopka, M.L, Lavelle, L, Han, G.W, Ng, H.-L, Dickerson, R.E.
登録日2003-06-03
公開日2003-12-09
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献An Unusual Sugar Conformation in the Structure of an RNA/DNA Decamer of the Polypurine Tract May Affect Recognition by RNase H
J.Mol.Biol., 334, 2003
334D
DownloadVisualize
BU of 334d by Molmil
DEFINING GC-SPECIFICITY IN THE MINOR GROOVE: SIDE-BY-SIDE BINDING OF THE DI-IMIDAZOLE LEXITROPSIN TO C-A-T-G-G-C-C-A-T-G
分子名称: CALCIUM ION, DIIMIDAZOLE LEXITROPSIN, DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3')
著者Kopka, M.L, Goodsell, D.S, Dickerson, R.E.
登録日1997-05-22
公開日1997-08-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Defining GC-specificity in the minor groove: side-by-side binding of the di-imidazole lexitropsin to C-A-T-G-G-C-C-A-T-G.
Structure, 5, 1997
307D
DownloadVisualize
BU of 307d by Molmil
Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis
分子名称: DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3')
著者Han, G.W, Kopka, M.L, Cascio, D, Grzeskowiak, K, Dickerson, R.E.
登録日1997-01-07
公開日1997-01-27
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis.
J.Mol.Biol., 269, 1997
1ZNA
DownloadVisualize
BU of 1zna by Molmil
CONFORMATION AND DYNAMICS IN A Z-DNA TETRAMER
分子名称: DNA (5'-D(*CP*GP*CP*G)-3')
著者Drew, H.R, Dickerson, R.E.
登録日1981-01-26
公開日1981-03-18
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Conformation and dynamics in a Z-DNA tetramer.
J.Mol.Biol., 152, 1981
3FIS
DownloadVisualize
BU of 3fis by Molmil
THE MOLECULAR STRUCTURE OF WILD-TYPE AND A MUTANT FIS PROTEIN: RELATIONSHIP BETWEEN MUTATIONAL CHANGES AND RECOMBINATIONAL ENHANCER FUNCTION OR DNA BINDING
分子名称: FACTOR FOR INVERSION STIMULATION (FIS)
著者Yuan, H.S, Finkel, S.E, Feng, J-A, Johnson, R.C, Dickerson, R.E.
登録日1991-08-12
公開日1993-10-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding.
Proc.Natl.Acad.Sci.USA, 88, 1991
1RNL
DownloadVisualize
BU of 1rnl by Molmil
THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL FROM NARL
分子名称: GLYCEROL, NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL, PLATINUM (II) ION
著者Baikalov, I, Schroder, I, Kaczor-Grzeskowiak, M, Grzeskowiak, K, Gunsalus, R.P, Dickerson, R.E.
登録日1996-04-17
公開日1996-11-08
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of the Escherichia coli response regulator NarL.
Biochemistry, 35, 1996
1IJW
DownloadVisualize
BU of 1ijw by Molmil
Testing the Water-Mediated Hin Recombinase DNA Recognition by Systematic Mutations.
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*(CBR)P*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3', ...
著者Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E.
登録日2001-04-30
公開日2002-02-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Testing water-mediated DNA recognition by the Hin recombinase.
EMBO J., 21, 2002

 

1234>

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon