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2KXE
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N-terminal domain of the DP1 subunit of an archaeal D-family DNA polymerase
分子名称: DNA polymerase II small subunit
著者Yamasaki, K, Matsui, I.
登録日2010-04-30
公開日2010-08-18
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of the N-terminal domain of the archaeal D-family DNA polymerase small subunit reveals evolutionary relationship to eukaryotic B-family polymerases
Febs Lett., 584, 2010
6IR4
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BU of 6ir4 by Molmil
Crystal structure of BioU from Synechocystis sp.PCC6803 (apo form)
分子名称: Slr0355 protein
著者Sakaki, K, Oishi, K, Shimizu, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2018-11-10
公開日2020-01-15
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A suicide enzyme catalyzes multiple reactions for biotin biosynthesis in cyanobacteria.
Nat.Chem.Biol., 16, 2020
2O4A
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BU of 2o4a by Molmil
Crystal Structure of the N-terminal CUT Domain of SATB1 Bound to Matrix Attachment Region DNA
分子名称: DNA (5'-D(*DGP*DCP*DAP*DTP*DAP*DTP*DAP*DTP*DTP*DAP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DTP*DAP*DAP*DTP*DAP*DTP*DAP*DTP*DGP*DC)-3'), DNA-binding protein SATB1
著者Yamasaki, K, Akiba, T, Harata, K.
登録日2006-12-04
公開日2007-08-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1.
Nucleic Acids Res., 35, 2007
2O49
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BU of 2o49 by Molmil
Crystal Structure of the N-terminal CUT domain of SATB1 Bound to Matrix Attachment Region DNA
分子名称: DNA (5'-D(*DGP*DCP*DAP*DTP*DAP*DTP*DAP*DTP*DTP*DAP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DTP*DAP*DAP*DTP*DAP*DTP*DAP*DTP*DGP*DC)-3'), DNA-binding protein SATB1
著者Yamasaki, K, Akiba, T, Harata, K.
登録日2006-12-04
公開日2007-08-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1.
Nucleic Acids Res., 35, 2007
2LEX
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BU of 2lex by Molmil
Complex of the C-terminal WRKY domain of AtWRKY4 and a W-box DNA
分子名称: DNA (5'-D(*CP*G*CP*CP*TP*TP*TP*GP*AP*CP*CP*AP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*C*TP*GP*GP*TP*CP*AP*AP*AP*GP*GP*CP*G)-3'), Probable WRKY transcription factor 4, ...
著者Yamasaki, K, Kigawa, T, Watanabe, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-06-24
公開日2012-01-18
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural basis for sequence-spscific DNA recognition by an Arabidopsis WRKY transcription factor
J.Biol.Chem., 2012
7VU9
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BU of 7vu9 by Molmil
Pholiota squarrosa lectin (PhoSL) in complex with fucose(alpha1-6)[GlcNAc(beta1-4)]GlcNAc
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, FORMIC ACID, Lectin (PhoSL)
著者Yamasaki, K, Yamasaki, T, Kubota, T.
登録日2021-11-01
公開日2022-10-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.154 Å)
主引用文献Core fucose-specific Pholiota squarrosa lectin (PhoSL) as a potent broad-spectrum inhibitor of SARS-CoV-2 infection.
Febs J., 290, 2023
1WJ0
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BU of 1wj0 by Molmil
Solution Structure of the DNA-Binding Domain of Squamosa Promoter Binding Protein-Like 12 Lacking the Second Zinc-Binding Site
分子名称: ZINC ION, squamosa promoter-binding protein-like 12
著者Yamasaki, K, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structure of the SBP Domain That Lacks the Second Zinc-Binding Site
To be Published
1WIJ
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Solution Structure of the DNA-Binding Domain of Ethylene-Insensitive3-Like3
分子名称: ETHYLENE-INSENSITIVE3-like 3 protein
著者Yamasaki, K, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the major DNA-binding domain of Arabidopsis thaliana ethylene-insensitive3-like3.
J.Mol.Biol., 348, 2005
1WJ2
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BU of 1wj2 by Molmil
Solution Structure of the C-terminal WRKY Domain of AtWRKY4
分子名称: Probable WRKY transcription factor 4, ZINC ION
著者Yamasaki, K, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of an Arabidopsis WRKY DNA binding domain.
Plant Cell, 17, 2005
1WID
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BU of 1wid by Molmil
Solution Structure of the B3 DNA-Binding Domain of RAV1
分子名称: DNA-binding protein RAV1
著者Yamasaki, K, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution Structure of the B3 DNA Binding Domain of the Arabidopsis Cold-Responsive Transcription Factor RAV1
Plant Cell, 16, 2004
1UL5
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BU of 1ul5 by Molmil
Solution structure of the DNA-binding domain of squamosa promoter binding protein-like 7
分子名称: ZINC ION, squamosa promoter binding protein-like 7
著者Yamasaki, K, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-09-09
公開日2004-03-09
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors.
J.Mol.Biol., 337, 2004
1UL4
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BU of 1ul4 by Molmil
Solution structure of the DNA-binding domain of squamosa promoter binding protein-like 4
分子名称: ZINC ION, squamosa promoter binding protein-like 4
著者Yamasaki, K, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-09-09
公開日2004-03-09
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors.
J.Mol.Biol., 337, 2004
2RUF
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BU of 2ruf by Molmil
Solution structure of the a' domain of thermophilic fungal protein disulfide (reduced form, 303K)
分子名称: Protein disulfide-isomerase
著者Inagaki, K, Satoh, T, Kato, K.
登録日2014-03-31
公開日2015-05-20
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Redox-coupled structural changes of the catalytic a' domain of protein disulfide isomerase.
Febs Lett., 589, 2015
2RUE
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BU of 2rue by Molmil
Solution structure of the a' domain of thermophilic fungal protein disulfide (oxidized form, 303K)
分子名称: Protein disulfide-isomerase
著者Inagaki, K, Satoh, T, Kato, K.
登録日2014-03-27
公開日2015-05-20
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Redox-coupled structural changes of the catalytic a' domain of protein disulfide isomerase.
Febs Lett., 589, 2015
2MLO
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BU of 2mlo by Molmil
Human CCR2 Membrane-Proximal C-Terminal Region (PRO-C) in a Membrane bound form
分子名称: MCP-1 receptor
著者Esaki, K, Yoshinaga, S, Tsuji, T, Toda, E, Terashima, Y, Saitoh, T, Kohda, D, Kohno, T, Osawa, M, Ueda, T, Shimada, I, Matsushima, K, Terasawa, H.
登録日2014-03-04
公開日2014-10-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT.
Febs J., 281, 2014
2D7G
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BU of 2d7g by Molmil
Crystal structure of the aa complex of the N-terminal domain of PriA
分子名称: DNA (5'-D(P*AP*A)-3'), Primosomal protein N'
著者Sasaki, K, Ose, T, Maenaka, K, Masai, H, Kohda, D.
登録日2005-11-21
公開日2006-11-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA.
EMBO J., 26, 2007
2D7H
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BU of 2d7h by Molmil
Crystal structure of the ccc complex of the N-terminal domain of PriA
分子名称: DNA (5'-D(P*CP*CP*C)-3'), Primosomal protein N'
著者Sasaki, K, Ose, T, Maenaka, K, Masai, H, Kohda, D.
登録日2005-11-21
公開日2006-11-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA.
EMBO J., 26, 2007
2D7E
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BU of 2d7e by Molmil
Crystal structure of N-terminal domain of PriA from E.coli
分子名称: Primosomal protein N'
著者Sasaki, K, Ose, T, Maenaka, K, Masai, H, Kohda, D.
登録日2005-11-18
公開日2006-11-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA.
EMBO J., 26, 2007
2MW8
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BU of 2mw8 by Molmil
Solution structure of SATB1 homeodomain
分子名称: DNA-binding protein SATB1
著者Yamasaki, K, Yamasaki, T.
登録日2014-10-31
公開日2015-11-04
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of SATB1 homeodomain
To be Published
2MLQ
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BU of 2mlq by Molmil
Human CCR2 Membrane-Proximal C-Terminal Region (PRO-C) in a frount bound form
分子名称: MCP-1 receptor
著者Esaki, K, Yoshinaga, S, Tsuji, T, Toda, E, Terashima, Y, Saitoh, T, Kohda, D, Kohno, T, Osawa, M, Ueda, T, Shimada, I, Matsushima, K, Terasawa, H.
登録日2014-03-04
公開日2014-10-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT.
Febs J., 281, 2014
3WO7
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BU of 3wo7 by Molmil
Crystal structure of YidC from Bacillus halodurans (form II)
分子名称: COPPER (II) ION, Membrane protein insertase YidC 2
著者Kumazaki, K, Tsukazaki, T, Ishitani, R, Nureki, O.
登録日2013-12-20
公開日2014-04-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.201 Å)
主引用文献Structural basis of Sec-independent membrane protein insertion by YidC.
Nature, 509, 2014
3WO6
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Crystal structure of YidC from Bacillus halodurans (form I)
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CADMIUM ION, Membrane protein insertase YidC 2
著者Kumazaki, K, Tsukazaki, T, Ishitani, R, Nureki, O.
登録日2013-12-20
公開日2014-04-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.403 Å)
主引用文献Structural basis of Sec-independent membrane protein insertion by YidC.
Nature, 509, 2014
6K36
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Crystal structure of BioU from Synechocystis sp.PCC6803 conjugated with DAPA
分子名称: (8S)-8-azanylnonanoic acid, Slr0355 protein
著者Sakaki, K, Tomita, T, Nishiyama, M.
登録日2019-05-16
公開日2020-02-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A suicide enzyme catalyzes multiple reactions for biotin biosynthesis in cyanobacteria.
Nat.Chem.Biol., 16, 2020
6K38
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Crystal structure of BioU (H233A) from Synechocystis sp.PCC6803 conjugated with DAPA
分子名称: (8S)-8-azanylnonanoic acid, Slr0355 protein
著者Sakaki, K, Tomita, T, Nishiyama, M.
登録日2019-05-16
公開日2020-02-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献A suicide enzyme catalyzes multiple reactions for biotin biosynthesis in cyanobacteria.
Nat.Chem.Biol., 16, 2020
6A86
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Pholiota squarrosa lectin
分子名称: (3R)-butane-1,3-diol, lectin
著者Yamasaki, K, Yamasaki, T, Kubota, T.
登録日2018-07-06
公開日2019-04-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for specific recognition of core fucosylation in N-glycans by Pholiota squarrosa lectin (PhoSL).
Glycobiology, 29, 2019

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件を2024-08-07に公開中

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