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1OM2
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BU of 1om2 by Molmil
SOLUTION NMR STRUCTURE OF THE MITOCHONDRIAL PROTEIN IMPORT RECEPTOR TOM20 FROM RAT IN A COMPLEX WITH A PRESEQUENCE PEPTIDE DERIVED FROM RAT ALDEHYDE DEHYDROGENASE (ALDH)
分子名称: PROTEIN (MITOCHONDRIAL ALDEHYDE DEHYDROGENASE), PROTEIN (MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20)
著者Abe, Y, Shodai, T, Muto, T, Mihara, K, Torii, H, Nishikawa, S, Endo, T, Kohda, D.
登録日1999-04-23
公開日2000-02-02
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Structural basis of presequence recognition by the mitochondrial protein import receptor Tom20.
Cell(Cambridge,Mass.), 100, 2000
3WW6
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BU of 3ww6 by Molmil
Crystal Structure of hen egg white lysozyme mutant N46D/D52S
分子名称: CHLORIDE ION, Lysozyme C
著者Abe, Y, Kubota, M, Ito, Y, Imoto, T, Ueda, T.
登録日2014-06-17
公開日2015-06-17
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Effect on catalysis by replacement of catalytic residue from hen egg white lysozyme to Venerupis philippinarum lysozyme.
Protein Sci., 25, 2016
3WW5
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BU of 3ww5 by Molmil
Crystal Structure of hen egg white lysozyme mutant N46E/D52S
分子名称: CHLORIDE ION, Lysozyme C
著者Abe, Y, Kubota, M, Ito, Y, Imoto, T, Ueda, T.
登録日2014-06-17
公開日2015-06-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Effect on catalysis by replacement of catalytic residue from hen egg white lysozyme to Venerupis philippinarum lysozyme.
Protein Sci., 25, 2016
2D35
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BU of 2d35 by Molmil
Solution structure of Cell Division Reactivation Factor, CedA
分子名称: Cell division activator cedA
著者Abe, Y, Watanabe, N, Matsuda, Y, Yoshida, Y, Katayama, T, Ueda, T.
登録日2005-09-26
公開日2006-12-12
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural Analysis and Molecular Interaction of Cell Division Reactivation Factor, CedA from Escherichia coli
To be Published
5YCQ
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BU of 5ycq by Molmil
Unique Specificity-Enhancing Factor for the AAA+ Lon Protease
分子名称: Heat shock protein HspQ
著者Abe, Y, Shioi, S, Kita, S, Nakata, H, Maenaka, K, Kohda, D, Katayama, T, Ueda, T.
登録日2017-09-08
公開日2018-04-11
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.503 Å)
主引用文献X-ray crystal structure of Escherichia coli HspQ, a protein involved in the retardation of replication initiation
FEBS Lett., 591, 2017
2E0G
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BU of 2e0g by Molmil
DnaA N-terminal domain
分子名称: Chromosomal replication initiator protein dnaA
著者Abe, Y, Katayama, T, Ueda, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-10-07
公開日2007-05-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure and Function of DnaA N-Terminal Domains: Specific Sites and Mechanisms in Inter-DnaA Interaction and in DnaB Helicase Loading on oriC
To be Published
7BYU
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BU of 7byu by Molmil
Crystal structure of Acidovorax avenae L-fucose mutarotase (apo form)
分子名称: 1,2-ETHANEDIOL, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, L-fucose mutarotase
著者Watanabe, Y, Fukui, Y, Watanabe, S.
登録日2020-04-24
公開日2020-05-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.206 Å)
主引用文献Functional and structural characterization of a novel L-fucose mutarotase involved in non-phosphorylative pathway of L-fucose metabolism.
Biochem.Biophys.Res.Commun., 528, 2020
7BYW
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BU of 7byw by Molmil
Crystal structure of Acidovorax avenae L-fucose mutarotase (L-fucose-bound form)
分子名称: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, L-fucose mutarotase, alpha-L-fucopyranose
著者Watanabe, Y, Watanabe, S.
登録日2020-04-24
公開日2020-05-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Functional and structural characterization of a novel L-fucose mutarotase involved in non-phosphorylative pathway of L-fucose metabolism.
Biochem.Biophys.Res.Commun., 528, 2020
6J7C
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BU of 6j7c by Molmil
Crystal structure of proline racemase-like protein from Thermococcus litoralis in complex with proline
分子名称: PROLINE, Proline racemase
著者Watanabe, Y, Watanabe, S, Itoh, Y, Watanabe, Y.
登録日2019-01-17
公開日2019-02-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of substrate-bound bifunctional proline racemase/hydroxyproline epimerase from a hyperthermophilic archaeon.
Biochem. Biophys. Res. Commun., 511, 2019
7YPD
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BU of 7ypd by Molmil
Discovery and characterization of a new carbonyl reductase from Rhodotorula toluroides reducing fluoroketones, and X-ray analysis of the variant by rational engineering
分子名称: Carbonyl reductase, MAGNESIUM ION
著者Watanabe, Y, Asano, Y, Hibi, M.
登録日2022-08-03
公開日2024-02-07
実験手法X-RAY DIFFRACTION (1.27 Å)
主引用文献Discovery and characterization of a new carbonyl reductase from Rhodotorula toluroides reducing fluoroketones, and X-ray analysis of the variant by rational engineering
To Be Published
4YTV
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BU of 4ytv by Molmil
Crystal structure of Mdm35
分子名称: COBALT (II) ION, GLYCEROL, Mitochondrial distribution and morphology protein 35
著者Watanabe, Y, Tamura, Y, Kawano, S, Endo, T.
登録日2015-03-18
公開日2015-08-12
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Nat Commun, 6, 2015
4YTW
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BU of 4ytw by Molmil
Crystal structure of Ups1-Mdm35 complex
分子名称: Mitochondrial distribution and morphology protein 35, Protein UPS1, mitochondrial
著者Watanabe, Y, Tamura, Y, Kawano, S, Endo, T.
登録日2015-03-18
公開日2015-08-12
最終更新日2020-02-05
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Nat Commun, 6, 2015
4YTX
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BU of 4ytx by Molmil
Crystal structure of Ups1-Mdm35 complex with PA
分子名称: 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE, Mitochondrial distribution and morphology protein 35, Protein UPS1, ...
著者Watanabe, Y, Tamura, Y, Kawano, S, Endo, T.
登録日2015-03-18
公開日2015-08-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Nat Commun, 6, 2015
5B2L
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BU of 5b2l by Molmil
A crucial role of Cys218 in the stabilization of an unprecedented auto-inhibition form of MAP2K7
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Dual specificity mitogen-activated protein kinase kinase 7, GLYCEROL
著者Sogabe, Y, Hashimoto, T, Matsumoto, T, Kirii, Y, Sawa, M, Kinoshita, T.
登録日2016-01-19
公開日2016-04-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A crucial role of Cys218 in configuring an unprecedented auto-inhibition form of MAP2K7
Biochem.Biophys.Res.Commun., 473, 2016
5B2M
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BU of 5b2m by Molmil
A crucial role of Cys218 in the stabilization of an unprecedented auto-inhibition form of MAP2K7
分子名称: Dual specificity mitogen-activated protein kinase kinase 7
著者Sogabe, Y, Hashimoto, T, Matsumoto, T, Kirii, Y, Sawa, M, Kinoshita, T.
登録日2016-01-19
公開日2016-04-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.06 Å)
主引用文献A crucial role of Cys218 in configuring an unprecedented auto-inhibition form of MAP2K7
Biochem.Biophys.Res.Commun., 473, 2016
5B2K
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BU of 5b2k by Molmil
A crucial role of Cys218 in the stabilization of an unprecedented auto-inhibition form of MAP2K7
分子名称: Dual specificity mitogen-activated protein kinase kinase 7
著者Sogabe, Y, Hashimoto, T, Matsumoto, T, Kirii, Y, Sawa, M, Kinoshita, T.
登録日2016-01-19
公開日2016-04-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献A crucial role of Cys218 in configuring an unprecedented auto-inhibition form of MAP2K7
Biochem.Biophys.Res.Commun., 473, 2016
6JNJ
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BU of 6jnj by Molmil
Crystal structure of Azospirillum brasilense L-arabinose 1-dehydrogenase (apo-form)
分子名称: L-arabinose 1-dehydrogenase (NAD(P)(+)), PHOSPHATE ION
著者Watanabe, Y, Iga, C, Watanabe, S.
登録日2019-03-16
公開日2019-05-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.
Febs Lett., 593, 2019
6L06
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BU of 6l06 by Molmil
Crystal structure of Escherichia coli phosphatidylserine decarboxylase (apo-form)
分子名称: Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain
著者Watanabe, Y, Watanabe, S.
登録日2019-09-26
公開日2020-04-15
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural Basis for Phosphatidylethanolamine Biosynthesis by Bacterial Phosphatidylserine Decarboxylase.
Structure, 28, 2020
6L07
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BU of 6l07 by Molmil
Crystal structure of Escherichia coli phosphatidylserine decarboxylase (PE-bound form)
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain
著者Watanabe, Y, Watanabe, S.
登録日2019-09-26
公開日2020-04-15
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural Basis for Phosphatidylethanolamine Biosynthesis by Bacterial Phosphatidylserine Decarboxylase.
Structure, 28, 2020
6JNK
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BU of 6jnk by Molmil
Crystal structure of Azospirillum brasilense L-arabinose 1-dehydrogenase (NADP-bound form)
分子名称: L-arabinose 1-dehydrogenase (NAD(P)(+)), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Watanabe, Y, Iga, C, Watanabe, S.
登録日2019-03-16
公開日2019-05-15
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.
Febs Lett., 593, 2019
6K9Y
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BU of 6k9y by Molmil
Crystal structure of human VAT-1
分子名称: NITRATE ION, Synaptic vesicle membrane protein VAT-1 homolog
著者Watanabe, Y, Endo, T.
登録日2019-06-19
公開日2020-02-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for interorganelle phospholipid transport mediated by VAT-1.
J.Biol.Chem., 295, 2020
5AXD
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BU of 5axd by Molmil
Crystal structure of mouse SAHH complexed with ribavirin
分子名称: 1-(beta-D-ribofuranosyl)-1H-1,2,4-triazole-3-carboxamide, Adenosylhomocysteinase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Kusakabe, Y, Ishihara, M, Tanaka, N.
登録日2015-07-24
公開日2016-07-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of mouse SAHH complexed with ribavirin
To Be Published
5AXB
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BU of 5axb by Molmil
Crystal structure of mouse SAHH complexed with noraristeromycin
分子名称: (1S,2R,3S,4R)-4-(6-aminopurin-9-yl)cyclopentane-1,2,3-triol, Adenosylhomocysteinase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Kusakabe, Y, Ishihara, M, Tanaka, N.
登録日2015-07-24
公開日2016-07-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of mouse SAHH complexed with noraristeromycin
To Be Published
5AXA
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BU of 5axa by Molmil
Crystal structure of mouse SAHH complexed with adenosine
分子名称: ADENOSINE, Adenosylhomocysteinase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Kusakabe, Y, Ishihara, M, Tanaka, N.
登録日2015-07-24
公開日2016-07-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal structure of mouse SAHH complexed with adenosine
To Be Published
5AUJ
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BU of 5auj by Molmil
Pyrococcus furiosus proliferating cell nuclear antigen (PCNA) SeMet derivative
分子名称: DNA polymerase sliding clamp
著者Watanabe, Y, Oyama, T.
登録日2015-04-21
公開日2016-04-27
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Pyrococcus furiosus proliferating cell nuclear antigen (PCNA) SeMet derivative
To Be Published

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