7BR5
| Lysozyme-sugar complex in H2O | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Lysozyme C, ... | 著者 | Tanaka, I, Chatake, T. | 登録日 | 2020-03-26 | 公開日 | 2021-03-10 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1 Å) | 主引用文献 | Recent structural insights into the mechanism of lysozyme hydrolysis. Acta Crystallogr D Struct Biol, 77, 2021
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7DER
| Lysozyme alone in H2O | 分子名称: | CHLORIDE ION, Lysozyme C, SODIUM ION | 著者 | Tanaka, I, Chatake, T. | 登録日 | 2020-11-04 | 公開日 | 2021-03-10 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.03 Å) | 主引用文献 | Recent structural insights into the mechanism of lysozyme hydrolysis. Acta Crystallogr D Struct Biol, 77, 2021
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7DEQ
| Lysozyme-sugar complex in D2O | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Lysozyme C, ... | 著者 | Tanaka, I, Chatake, T. | 登録日 | 2020-11-04 | 公開日 | 2021-03-10 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.03 Å) | 主引用文献 | Recent structural insights into the mechanism of lysozyme hydrolysis. Acta Crystallogr D Struct Biol, 77, 2021
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2ZY6
| Crystal structure of a truncated tRNA, TPHE39A | 分子名称: | CALCIUM ION, CHLORIDE ION, MAGNESIUM ION, ... | 著者 | Tanaka, I, Yao, M, Tanaka, Y, Kitago, Y, Ymagata, S. | 登録日 | 2009-01-14 | 公開日 | 2009-06-30 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Deduced RNA binding mechanism of ThiI based on structural and binding analyses of a minimal RNA ligand Rna, 15, 2009
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1DPT
| D-DOPACHROME TAUTOMERASE | 分子名称: | D-DOPACHROME TAUTOMERASE | 著者 | Sugimoto, H, Taniguchi, M, Nakagawa, A, Tanaka, I. | 登録日 | 1998-05-11 | 公開日 | 1999-03-30 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.54 Å) | 主引用文献 | Crystal structure of human D-dopachrome tautomerase, a homologue of macrophage migration inhibitory factor, at 1.54 A resolution. Biochemistry, 38, 1999
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4P1Y
| Crystal structure of staphylococcal gamma-hemolysin prepore | 分子名称: | Gamma-hemolysin component A, Gamma-hemolysin component B | 著者 | Yamashita, D, Tanaka, Y, Tanaka, I, Yao, M. | 登録日 | 2014-02-28 | 公開日 | 2014-10-01 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.992 Å) | 主引用文献 | Molecular basis of transmembrane beta-barrel formation of staphylococcal pore-forming toxins. Nat Commun, 5, 2014
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4P1X
| Crystal structure of staphylococcal LUK prepore | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, Gamma-hemolysin component B, Gamma-hemolysin component C | 著者 | Yamashita, D, Tanaka, Y, Tanaka, I, Yao, M. | 登録日 | 2014-02-28 | 公開日 | 2014-10-01 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Molecular basis of transmembrane beta-barrel formation of staphylococcal pore-forming toxins. Nat Commun, 5, 2014
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4WJ3
| Crystal structure of the asparagine transamidosome from Pseudomonas aeruginosa | 分子名称: | 76mer-tRNA, Aspartate--tRNA(Asp/Asn) ligase, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, ... | 著者 | Suzuki, T, Nakamura, A, Kato, K, Tanaka, I, Yao, M. | 登録日 | 2014-09-29 | 公開日 | 2014-12-31 | 最終更新日 | 2020-02-05 | 実験手法 | X-RAY DIFFRACTION (3.705 Å) | 主引用文献 | Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis Proc.Natl.Acad.Sci.USA, 112, 2015
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4WJ4
| Crystal structure of non-discriminating aspartyl-tRNA synthetase from Pseudomonas aeruginosa complexed with tRNA(Asn) and aspartic acid | 分子名称: | 76mer-tRNA, ASPARTIC ACID, Aspartate--tRNA(Asp/Asn) ligase | 著者 | Suzuki, T, Nakamura, A, Kato, K, Tanaka, I, Yao, M. | 登録日 | 2014-09-29 | 公開日 | 2014-12-31 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (3.294 Å) | 主引用文献 | Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis Proc.Natl.Acad.Sci.USA, 112, 2015
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3IS1
| Crystal structure of functional region of UafA from Staphylococcus saprophyticus in C2 form at 2.45 angstrom resolution | 分子名称: | GLYCEROL, Uro-adherence factor A | 著者 | Tanaka, Y, Matsuoka, E, Shouji, Y, Kuroda, M, Tanaka, I, Yao, M. | 登録日 | 2009-08-24 | 公開日 | 2010-09-08 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.45 Å) | 主引用文献 | Crystal structure of the functional region of Uro-adherence factor A from Staphylococcus saprophyticus reveals participation of the B domain in ligand binding Protein Sci., 20, 2011
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3IS0
| Crystal structure of functional region of UafA from Staphylococcus saprophyticus in the presence of cholesterol | 分子名称: | GLYCEROL, Uro-adherence factor A | 著者 | Tanaka, Y, Shouji, Y, Matsuoka, E, Kuroda, M, Tanaka, I, Yao, M. | 登録日 | 2009-08-24 | 公開日 | 2010-09-08 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Crystal Structure of Functional Region of UafA from Staphylococcus saprophyticus To be Published
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3IRP
| Crystal structure of functional region of UafA from Staphylococcus saprophyticus at 1.50 angstrom resolution | 分子名称: | GLYCEROL, POTASSIUM ION, Uro-adherence factor A | 著者 | Tanaka, Y, Shouji, Y, Matsuoka, E, Kuroda, M, Tanaka, I, Yao, M. | 登録日 | 2009-08-24 | 公開日 | 2010-09-08 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Crystal structure of the functional region of Uro-adherence factor A from Staphylococcus saprophyticus reveals participation of the B domain in ligand binding Protein Sci., 20, 2011
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3IRZ
| Crystal structure of functional region of UafA from Staphylococcus saprophyticus in P212121 form | 分子名称: | GLYCEROL, Uro-adherence factor A | 著者 | Tanaka, Y, Shouji, Y, Matsuoka, E, Kuroda, M, Tanaka, I, Yao, M. | 登録日 | 2009-08-24 | 公開日 | 2010-09-08 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Crystal structure of the functional region of Uro-adherence factor A from Staphylococcus saprophyticus reveals participation of the B domain in ligand binding Protein Sci., 20, 2011
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3AZV
| Crystal structure of the receptor binding domain | 分子名称: | D/C mosaic neurotoxin, SULFATE ION | 著者 | Nuemket, N, Tanaka, Y, Tsukamoto, K, Tsuji, T, Nakamura, K, Kozaki, S, Yao, M, Tanaka, I. | 登録日 | 2011-06-02 | 公開日 | 2011-12-28 | 最終更新日 | 2017-10-11 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | Structural and mutational analyses of the receptor binding domain of botulinum D/C mosaic neurotoxin: insight into the ganglioside binding mechanism Biochem.Biophys.Res.Commun., 411, 2011
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3AZW
| Crystal structure of the receptor binding domain | 分子名称: | D/C mosaic neurotoxin, SULFATE ION | 著者 | Nuemket, N, Tanaka, Y, Tsukamoto, K, Tsuji, T, Nakamura, K, Kozaki, S, Yao, M, Tanaka, I. | 登録日 | 2011-06-02 | 公開日 | 2011-12-28 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.99 Å) | 主引用文献 | Structural and mutational analyses of the receptor binding domain of botulinum D/C mosaic neurotoxin: insight into the ganglioside binding mechanism Biochem.Biophys.Res.Commun., 411, 2011
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5IP1
| Tomato spotted wilt tospovirus nucleocapsid protein | 分子名称: | Nucleoprotein | 著者 | Komoda, K, Narita, M, Yamashita, K, Tanaka, I, Yao, M. | 登録日 | 2016-03-09 | 公開日 | 2017-03-22 | 最終更新日 | 2018-03-21 | 実験手法 | X-RAY DIFFRACTION (2.703 Å) | 主引用文献 | Asymmetric Trimeric Ring Structure of the Nucleocapsid Protein of Tospovirus. J. Virol., 91, 2017
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4F86
| Structure analysis of Geranyl diphosphate methyltransferase in complex with GPP and sinefungin | 分子名称: | GERANYL DIPHOSPHATE, Geranyl diphosphate 2-C-methyltransferase, MAGNESIUM ION, ... | 著者 | Ariyawutthiphan, O, Ose, T, Minami, A, Gao, Y.G, Yao, M, Oikawa, H, Tanaka, I. | 登録日 | 2012-05-17 | 公開日 | 2012-10-31 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Structure analysis of geranyl pyrophosphate methyltransferase and the proposed reaction mechanism of SAM-dependent C-methylation Acta Crystallogr.,Sect.D, 68, 2012
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4F85
| Structure analysis of Geranyl diphosphate methyltransferase | 分子名称: | Geranyl diphosphate 2-C-methyltransferase | 著者 | Ariyawutthiphan, O, Ose, T, Minami, A, Gao, Y.G, Yao, M, Oikawa, H, Tanaka, I. | 登録日 | 2012-05-17 | 公開日 | 2012-10-31 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structure analysis of geranyl pyrophosphate methyltransferase and the proposed reaction mechanism of SAM-dependent C-methylation Acta Crystallogr.,Sect.D, 68, 2012
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4F84
| Structure analysis of Geranyl diphosphate methyltransferase in complex with SAM | 分子名称: | Geranyl diphosphate 2-C-methyltransferase, S-ADENOSYLMETHIONINE | 著者 | Ariyawutthiphan, O, Ose, T, Minami, A, Gao, Y.G, Yao, M, Oikawa, H, Tanaka, I. | 登録日 | 2012-05-17 | 公開日 | 2012-10-31 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structure analysis of geranyl pyrophosphate methyltransferase and the proposed reaction mechanism of SAM-dependent C-methylation Acta Crystallogr.,Sect.D, 68, 2012
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1BK7
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1EL1
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1J08
| Crystal structure of glutaredoxin-like protein from Pyrococcus horikoshii | 分子名称: | glutaredoxin-like protein | 著者 | Tanaka, Y, Tanabe, E, Tsumoto, K, Kumagai, I, Yao, M, Tanaka, I. | 登録日 | 2002-11-11 | 公開日 | 2003-05-11 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Protein disulfide isomerase from hyperthermophile as an additives of refolding of an immunoglobulin-folded protein To be Published
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1J2V
| Crystal Structure of CutA1 from Pyrococcus Horikoshii | 分子名称: | 102AA long hypothetical periplasmic divalent cation tolerance protein CUTA | 著者 | Tanaka, Y, Sakai, N, Yasutake, Y, Yao, M, Tsumoto, K, Kumagai, I, Tanaka, I. | 登録日 | 2003-01-11 | 公開日 | 2004-01-13 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA. Febs Lett., 556, 2004
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1TAB
| STRUCTURE OF THE TRYPSIN-BINDING DOMAIN OF BOWMAN-BIRK TYPE PROTEASE INHIBITOR AND ITS INTERACTION WITH TRYPSIN | 分子名称: | BOWMAN-BIRK TYPE PROTEINASE INHIBITOR, TRYPSIN | 著者 | Tsunogae, Y, Tanaka, I, Yamane, T, Kikkawa, J.-I, Ashida, T, Ishikawa, C, Watanabe, K, Nakamura, S, Takahashi, K. | 登録日 | 1990-10-15 | 公開日 | 1992-01-15 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structure of the trypsin-binding domain of Bowman-Birk type protease inhibitor and its interaction with trypsin. J.Biochem.(Tokyo), 100, 1986
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1J1G
| Crystal structure of the RNase MC1 mutant N71S in complex with 5'-GMP | 分子名称: | GUANOSINE-5'-MONOPHOSPHATE, Ribonuclease MC1 | 著者 | Numata, T, Suzuki, A, Kakuta, Y, Kimura, K, Yao, M, Tanaka, I, Yoshida, Y, Ueda, T, Kimura, M. | 登録日 | 2002-12-04 | 公開日 | 2003-05-20 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity Biochemistry, 42, 2003
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