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3VGL
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BU of 3vgl by Molmil
Crystal structure of a ROK family glucokinase from Streptomyces griseus in complex with glucose and AMPPNP
分子名称: Glucokinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SODIUM ION, ...
著者Miyazono, K, Tabei, N, Morita, S, Ohnishi, Y, Horinouchi, S, Tanokura, M.
登録日2011-08-15
公開日2011-12-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Substrate recognition mechanism and substrate-dependent conformational changes of an ROK family glucokinase from Streptomyces griseus
J.Bacteriol., 194, 2012
3VXE
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BU of 3vxe by Molmil
Human alpha-thrombin-Bivalirudin complex at PD5.0
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, BIVALIRUDIN, Thrombin heavy chain, ...
著者Yamada, T, Kurihara, K, Masumi, K, Tamada, T, Tomoyori, K, Ohnishi, Y, Tanaka, I, Kuroki, R, Niimura, N.
登録日2012-09-12
公開日2013-09-04
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Neutron and X-ray crystallographic analysis of the human alpha-thrombin-bivalirudin complex at pD 5.0: protonation states and hydration structure of the enzyme-product complex
Biochim.Biophys.Acta, 1834, 2013
6L4P
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BU of 6l4p by Molmil
Crystal structure of the complex between the axonemal outer-arm dynein light chain-1 and microtubule binding domain of gamma heavy chain
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Dynein light chain 1, axonemal, ...
著者Toda, A, Nishikawa, Y, Tanaka, H, Yagi, T, Kurisu, G.
登録日2019-10-19
公開日2020-02-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.703 Å)
主引用文献The complex of outer-arm dynein light chain-1 and the microtubule-binding domain of the gamma heavy chain shows how axonemal dynein tunes ciliary beating.
J.Biol.Chem., 295, 2020
6L2F
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BU of 6l2f by Molmil
Crystal structure of a cupin protein (tm1459, H54AH58A mutant) in copper (Cu) substituted form
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, COPPER (II) ION, ...
著者Fujieda, N, Ichihashi, H, Nishikawa, Y, Kurisu, G, Itoh, S.
登録日2019-10-03
公開日2020-04-01
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.23 Å)
主引用文献Cupin Variants as a Macromolecular Ligand Library for Stereoselective Michael Addition of Nitroalkanes.
Angew.Chem.Int.Ed.Engl., 59, 2020
3WQP
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BU of 3wqp by Molmil
Crystal structure of Rubisco T289D mutant from Thermococcus kodakarensis
分子名称: 1,2-ETHANEDIOL, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, ...
著者Fujihashi, M, Nishitani, Y, Kiriyama, T, Miki, K.
登録日2014-01-29
公開日2015-02-04
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Mutation design of thermophilic Rubisco based on the three-dimensional structure enhances its activity at ambient temperature
to be published
7BUL
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BU of 7bul by Molmil
Solution structure of the tandem PH and BSD1 domains of TFIIH p62
分子名称: General transcription factor IIH subunit 1
著者Okuda, M, Nishimura, Y.
登録日2020-04-07
公開日2020-12-30
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural and dynamical insights into the PH domain of p62 in human TFIIH.
Nucleic Acids Res., 49, 2021
7FBW
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BU of 7fbw by Molmil
Acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis
分子名称: NICKEL (II) ION, Predicted xylanase/chitin deacetylase
著者Sasamoto, K, Himiyama, T, Moriyoshi, K, Ohmoto, T, Uegaki, K, Nishiya, Y, Nakamura, T.
登録日2021-07-13
公開日2021-10-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis.
Acta Crystallogr.,Sect.F, 77, 2021
2YQC
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BU of 2yqc by Molmil
Crystal Structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the apo-like form
分子名称: GLYCEROL, MAGNESIUM ION, UDP-N-acetylglucosamine pyrophosphorylase
著者Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A.
登録日2007-03-30
公開日2007-05-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism
J.Biol.Chem., 282, 2007
2YQJ
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BU of 2yqj by Molmil
Crystal Structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the reaction-completed form
分子名称: GLYCEROL, MAGNESIUM ION, SULFATE ION, ...
著者Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A.
登録日2007-03-30
公開日2007-05-22
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism
J.Biol.Chem., 282, 2007
3A11
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BU of 3a11 by Molmil
Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1
分子名称: DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, Translation initiation factor eIF-2B, ...
著者Nakamura, A, Fujihashi, M, Nishiba, Y, Yoshida, S, Yano, A, Atomi, H, Imanaka, T, Miki, K.
登録日2009-03-25
公開日2010-03-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
2YQH
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BU of 2yqh by Molmil
Crystal structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the substrate-binding form
分子名称: 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose, GLYCEROL, MAGNESIUM ION, ...
著者Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A.
登録日2007-03-30
公開日2007-05-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism
J.Biol.Chem., 282, 2007
3AUP
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BU of 3aup by Molmil
Crystal structure of Basic 7S globulin from soybean
分子名称: Basic 7S globulin
著者Yoshizawa, T, Shimizu, T, Taichi, M, Nishiuchi, Y, Yamabe, M, Shichijo, N, Unzai, S, Hirano, H, Sato, M, Hashimoto, H.
登録日2011-02-14
公開日2011-04-27
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Crystal structure of basic 7S globulin, a xyloglucan-specific endo-beta-1,4-glucanase inhibitor protein-like protein from soybean lacking inhibitory activity against endo-beta-glucanase
Febs J., 278, 2011
3APM
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BU of 3apm by Molmil
Crystal structure of the human SNP PAD4 protein
分子名称: Protein-arginine deiminase type-4
著者Horikoshi, N, Tachiwana, H, Saito, K, Osakabe, A, Sato, M, Yamada, M, Akashi, S, Nishimura, Y, Kagawa, W, Kurumizaka, H.
登録日2010-10-19
公開日2011-01-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene
Acta Crystallogr.,Sect.D, 67, 2011
2Z33
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BU of 2z33 by Molmil
Solution structure of the DNA complex of PhoB DNA-binding/transactivation Domain
分子名称: 5'-D(*AP*CP*AP*GP*AP*TP*TP*TP*AP*TP*GP*AP*CP*AP*GP*T)-3', 5'-D(*AP*CP*TP*GP*TP*CP*AP*TP*AP*AP*AP*TP*CP*TP*GP*T)-3', Phosphate regulon transcriptional regulatory protein phoB
著者Yamane, T, Okamura, H, Ikeguchi, M, Nishimura, Y, Kidera, A.
登録日2007-05-31
公開日2008-04-22
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.
Proteins, 71, 2008
3A9C
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BU of 3a9c by Molmil
Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1 in complex with ribulose-1,5-bisphosphate
分子名称: DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, RIBULOSE-1,5-DIPHOSPHATE, ...
著者Nakamura, A, Fujihashi, M, Nishiba, Y, Yoshida, S, Yano, A, Atomi, H, Imanaka, T, Miki, K.
登録日2009-10-22
公開日2010-11-03
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
3APN
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BU of 3apn by Molmil
Crystal structure of the human wild-type PAD4 protein
分子名称: Protein-arginine deiminase type-4
著者Horikoshi, N, Tachiwana, H, Saito, K, Osakabe, A, Sato, M, Yamada, M, Akashi, S, Nishimura, Y, Kagawa, W, Kurumizaka, H.
登録日2010-10-19
公開日2011-01-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene
Acta Crystallogr.,Sect.D, 67, 2011
2YQS
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BU of 2yqs by Molmil
Crystal structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the product-binding form
分子名称: GLYCEROL, MAGNESIUM ION, SULFATE ION, ...
著者Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A.
登録日2007-03-30
公開日2007-05-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism
J.Biol.Chem., 282, 2007
2DTX
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BU of 2dtx by Molmil
Structure of Thermoplasma acidophilum aldohexose dehydrogenase (AldT) in complex with D-mannose
分子名称: Glucose 1-dehydrogenase related protein, SULFATE ION, beta-D-mannopyranose
著者Yasutake, Y, Nishiya, Y, Tamura, N, Tamura, T.
登録日2006-07-18
公開日2007-03-27
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural Insights into Unique Substrate Selectivity of Thermoplasma acidophilumd-Aldohexose Dehydrogenase
J.Mol.Biol., 367, 2007
2DTD
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BU of 2dtd by Molmil
Structure of Thermoplasma acidophilum aldohexose dehydrogenase (AldT) in ligand-free form
分子名称: Glucose 1-dehydrogenase related protein, SULFATE ION
著者Yasutake, Y, Nishiya, Y, Tamura, N, Tamura, T.
登録日2006-07-12
公開日2007-03-27
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Insights into Unique Substrate Selectivity of Thermoplasma acidophilumd-Aldohexose Dehydrogenase
J.Mol.Biol., 367, 2007
2DTE
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BU of 2dte by Molmil
Structure of Thermoplasma acidophilum aldohexose dehydrogenase (AldT) in complex with NADH
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Glucose 1-dehydrogenase related protein
著者Yasutake, Y, Nishiya, Y, Tamura, N, Tamura, T.
登録日2006-07-12
公開日2007-03-27
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural Insights into Unique Substrate Selectivity of Thermoplasma acidophilumd-Aldohexose Dehydrogenase
J.Mol.Biol., 367, 2007
2CZY
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BU of 2czy by Molmil
Solution structure of the NRSF/REST-mSin3B PAH1 complex
分子名称: Paired amphipathic helix protein Sin3b, transcription factor REST (version 3)
著者Nomura, M, Uda-Tochio, H, Murai, K, Mori, N, Nishimura, Y.
登録日2005-07-20
公開日2005-12-20
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献The Neural Repressor NRSF/REST Binds the PAH1 Domain of the Sin3 Corepressor by Using its Distinct Short Hydrophobic Helix
J.Mol.Biol., 354, 2005
2DY7
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BU of 2dy7 by Molmil
Solution structure of the first chromodomain of yeast Chd1
分子名称: Chromo domain protein 1
著者Okuda, M, Nishimura, Y.
登録日2006-09-07
公開日2006-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural Polymorphism of Chromodomains in Chd1
J.Mol.Biol., 365, 2007
2DY8
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BU of 2dy8 by Molmil
Solution structure of the second chromodomain of yeast Chd1
分子名称: Chromo domain protein 1
著者Okuda, M, Nishimura, Y.
登録日2006-09-07
公開日2006-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural Polymorphism of Chromodomains in Chd1
J.Mol.Biol., 365, 2007
3CLF
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BU of 3clf by Molmil
HIV neutralizing monoclonal antibody YZ23
分子名称: Fab heavy chain, Fab light chain
著者Symersky, J, Boivin, S, Paul, S.
登録日2008-03-18
公開日2008-03-25
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献HIV neutralizing monoclonal antibody YZ23
To be Published
3CLE
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BU of 3cle by Molmil
HIV neutralizing monoclonal antibody YZ23
分子名称: Fab heavy chain, Fab light chain
著者Jin, L, Paul, S, Symersky, J.
登録日2008-03-18
公開日2008-03-25
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献HIV neutralizing monoclonal antibody YZ23
To be Published

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