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3NBS
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BU of 3nbs by Molmil
Crystal structure of dimeric cytochrome c from horse heart
分子名称: Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ...
著者Taketa, M, Komori, H, Hirota, S, Higuchi, Y.
登録日2010-06-04
公開日2010-07-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Cytochrome c polymerization by successive domain swapping at the C-terminal helix
Proc.Natl.Acad.Sci.USA, 107, 2010
3NBT
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BU of 3nbt by Molmil
Crystal structure of trimeric cytochrome c from horse heart
分子名称: Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ...
著者Taketa, M, Komori, H, Hirota, S, Higuchi, Y.
登録日2010-06-04
公開日2010-07-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Cytochrome c polymerization by successive domain swapping at the C-terminal helix
Proc.Natl.Acad.Sci.USA, 107, 2010
5GQC
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BU of 5gqc by Molmil
Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form
分子名称: CALCIUM ION, Lacto-N-biosidase, SODIUM ION
著者Yamada, C, Arakawa, T, Katayama, T, Fushinobu, S.
登録日2016-08-07
公開日2017-04-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Cell Chem Biol, 24, 2017
5GQG
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BU of 5gqg by Molmil
Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex
分子名称: CALCIUM ION, Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose
著者Yamada, C, Arakawa, T, Katayama, T, Fushinobu, S.
登録日2016-08-07
公開日2017-04-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Cell Chem Biol, 24, 2017
5GQF
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BU of 5gqf by Molmil
Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex
分子名称: CALCIUM ION, Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Yamada, C, Arakawa, T, Katayama, T, Fushinobu, S.
登録日2016-08-07
公開日2017-04-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Cell Chem Biol, 24, 2017
3ACT
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BU of 3act by Molmil
Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Histidine mutant
分子名称: Cellobiose Phosphorylase, GLYCEROL, PHOSPHATE ION, ...
著者Hidaka, M, Hayashi, M.A, Fushinobu, S.
登録日2010-01-08
公開日2010-12-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Engineering of cellobiose phosphorylase
To be Published
3ABZ
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BU of 3abz by Molmil
Crystal structure of Se-Met labeled Beta-glucosidase from Kluyveromyces marxianus
分子名称: Beta-glucosidase I, GLYCEROL
著者Yoshida, E, Hidaka, M, Fushinobu, S, Katayama, T, Kumagai, H.
登録日2009-12-25
公開日2010-08-11
最終更新日2013-10-30
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Role of a PA14 domain in determining substrate specificity of a glycoside hydrolase family 3 beta-glucosidase from Kluyveromyces marxianus.
Biochem.J., 431, 2010
3ACS
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BU of 3acs by Molmil
Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase W488F mutant
分子名称: Cellobiose Phosphorylase, SULFATE ION, beta-D-glucopyranose
著者Hidaka, M, Arai, T, Fushinobu, S.
登録日2010-01-08
公開日2010-12-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献Engineering of cellobiose phosphorylase
To be Published
3AFJ
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BU of 3afj by Molmil
Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase triple mutant
分子名称: Cellobiose Phosphorylase, PHOSPHATE ION, POTASSIUM ION, ...
著者Hidaka, M, Ogawa, N, Fushinobu, S.
登録日2010-03-04
公開日2011-03-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Engineering of cellobiose phosphorylase
To be Published
4ZLF
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BU of 4zlf by Molmil
Cellobionic acid phosphorylase - cellobionic acid complex
分子名称: 4-O-beta-D-glucopyranosyl-D-gluconic acid, CHLORIDE ION, GLYCEROL, ...
著者Nam, Y.W, Arakawa, T, Fushinobu, S.
登録日2015-05-01
公開日2015-06-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes.
J.Biol.Chem., 290, 2015
4ZLI
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BU of 4zli by Molmil
Cellobionic acid phosphorylase - 3-O-beta-D-glucopyranosyl-alpha-D-glucopyranuronic acid complex
分子名称: CHLORIDE ION, GLYCEROL, Putative b-glycan phosphorylase, ...
著者Nam, Y.W, Arakawa, T, Fushinobu, S.
登録日2015-05-01
公開日2015-06-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes.
J.Biol.Chem., 290, 2015
4ZLE
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BU of 4zle by Molmil
Cellobionic acid phosphorylase - ligand free structure
分子名称: CHLORIDE ION, GLYCEROL, Putative b-glycan phosphorylase, ...
著者Nam, Y.W, Arakawa, T, Fushinobu, S.
登録日2015-05-01
公開日2015-06-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes.
J.Biol.Chem., 290, 2015
4ZLG
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BU of 4zlg by Molmil
Cellobionic acid phosphorylase - gluconic acid complex
分子名称: CHLORIDE ION, D-gluconic acid, D-glucono-1,5-lactone, ...
著者Nam, Y.W, Arakawa, T, Fushinobu, S.
登録日2015-05-01
公開日2015-06-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes.
J.Biol.Chem., 290, 2015
5WZP
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BU of 5wzp by Molmil
Alpha-N-acetylgalactosaminidase NagBb from Bifidobacterium bifidum - ligand free
分子名称: Alpha-N-acetylgalactosaminidase, CALCIUM ION, ZINC ION
著者Sato, M, Arakawa, T, Ashida, H, Fushinobu, S.
登録日2017-01-18
公開日2017-06-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
5WZQ
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BU of 5wzq by Molmil
Alpha-N-acetylgalactosaminidase NagBb from Bifidobacterium bifidum - quadruple mutant
分子名称: Alpha-N-acetylgalactosaminidase, GLYCEROL, ZINC ION
著者Sato, M, Arakawa, T, Ashida, H, Fushinobu, S.
登録日2017-01-18
公開日2017-06-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
5WZR
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BU of 5wzr by Molmil
Alpha-N-acetylgalactosaminidase NagBb from Bifidobacterium bifidum - Gal-NHAc-DNJ complex
分子名称: Alpha-N-acetylgalactosaminidase, CALCIUM ION, N-[(3S,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)piperidin-3-yl]acetamide, ...
著者Sato, M, Arakawa, T, Ashida, H, Fushinobu, S.
登録日2017-01-18
公開日2017-06-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
5WZN
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BU of 5wzn by Molmil
Alpha-N-acetylgalactosaminidase NagBb from Bifidobacterium bifidum - GalNAc complex
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, Alpha-N-acetylgalactosaminidase, CALCIUM ION, ...
著者Sato, M, Arakawa, T, Ashida, H, Fushinobu, S.
登録日2017-01-18
公開日2017-06-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
3AC0
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BU of 3ac0 by Molmil
Crystal structure of Beta-glucosidase from Kluyveromyces marxianus in complex with glucose
分子名称: Beta-glucosidase I, beta-D-glucopyranose
著者Yoshida, E, Hidaka, M, Fushinobu, S, Katayama, T, Kumagai, H.
登録日2009-12-25
公開日2010-08-11
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.54 Å)
主引用文献Role of a PA14 domain in determining substrate specificity of a glycoside hydrolase family 3 beta-glucosidase from Kluyveromyces marxianus.
Biochem.J., 431, 2010
7V1W
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BU of 7v1w by Molmil
Difructose dianhydride I synthase/hydrolase (alphaFFase1) from Bifidobacterium dentium in complex with beta-D-arabinofuranose
分子名称: CALCIUM ION, Difructose dianhydride I synthase/hydrolase (alphaFFase1), beta-D-arabinofuranose
著者Kashima, T, Arakawa, T, Yamada, C, Fujita, K, Fushinobu, S.
登録日2021-08-06
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family.
J.Biol.Chem., 297, 2021
7V1X
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BU of 7v1x by Molmil
Difructose dianhydride I synthase/hydrolase (alphaFFase1) from Bifidobacterium dentium in complex with beta-D-fructofuranose
分子名称: CALCIUM ION, Difructose dianhydride I synthase/hydrolase, beta-D-fructofuranose
著者Kashima, T, Arakawa, T, Yamada, C, Fujita, K, Fushinobu, S.
登録日2021-08-06
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family.
J.Biol.Chem., 297, 2021
7V1V
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BU of 7v1v by Molmil
Difructose dianhydride I synthase/hydrolase (alphaFFase1) from Bifidobacterium dentium, ligand-free form
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, D(-)-TARTARIC ACID, ...
著者Kashima, T, Arakawa, T, Yamada, C, Fujita, K, Fushinobu, S.
登録日2021-08-06
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family.
J.Biol.Chem., 297, 2021
8I5L
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BU of 8i5l by Molmil
Crystal structure of P domain from norovirus GI.4 capsid protein in complex with broad specificity antibody single-chain Fv fragment CV-2F5.
分子名称: Capsid protein, scFv fragment
著者Kato-Murayama, M, Murayama, K, Shirouzu, M.
登録日2023-01-26
公開日2024-01-31
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural analyses of the GI.4 norovirus by cryo-electron microscopy and X-ray crystallography revealing binding sites for human monoclonal antibodies.
J.Virol., 98, 2024
6HUS
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BU of 6hus by Molmil
2'-fucosyllactose and 3-fucosyllactose binding protein from Bifidobacterium longum infantis, bound with 3-fucosyllactose
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ABC transporter substrate-binding protein, ZINC ION, ...
著者Ejby, M, Abou Hachem, M, Lo Leggio, L, Takane, K, Sakanaka, M.
登録日2018-10-09
公開日2019-09-04
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.409 Å)
主引用文献Evolutionary adaptation in fucosyllactose uptake systems supports bifidobacteria-infant symbiosis.
Sci Adv, 5, 2019
6HUR
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BU of 6hur by Molmil
2'-fucosyllactose and 3-fucosyllactose binding protein from Bifidobacterium longum infantis, bound with 2'-fucosyllactose
分子名称: 2-(2-METHOXYETHOXY)ETHANOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ABC transporter substrate-binding protein, ...
著者Ejby, M, Abou Hachem, M, Lo Leggio, L, Katayama, T, Sakanaka, M.
登録日2018-10-09
公開日2019-09-04
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.297 Å)
主引用文献Evolutionary adaptation in fucosyllactose uptake systems supports bifidobacteria-infant symbiosis.
Sci Adv, 5, 2019
4JAW
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BU of 4jaw by Molmil
Crystal Structure of Lacto-N-Biosidase from Bifidobacterium bifidum complexed with LNB-thiazoline
分子名称: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL, Lacto-N-biosidase, SULFATE ION, ...
著者Ito, T, Katayama, T, Stubbs, K.A, Fushinobu, S.
登録日2013-02-19
公開日2013-03-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of a glycoside hydrolase family 20 lacto-N-biosidase from Bifidobacterium bifidum
J.Biol.Chem., 288, 2013

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