7DVE
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![BU of 7dve by Molmil](/molmil-images/mine/7dve) | Crystal structure of FAD-dependent C-glycoside oxidase | 分子名称: | 6'''-hydroxyparomomycin C oxidase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION | 著者 | Senda, M, Watanabe, S, Kumano, T, Kobayashi, M, Senda, T. | 登録日 | 2021-01-13 | 公開日 | 2021-09-08 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | FAD-dependent C -glycoside-metabolizing enzymes in microorganisms: Screening, characterization, and crystal structure analysis. Proc.Natl.Acad.Sci.USA, 118, 2021
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3WRC
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![BU of 3wrc by Molmil](/molmil-images/mine/3wrc) | Crystal structure of the anaerobic DesB-Protocatechuate (PCA) complex | 分子名称: | 3,4-DIHYDROXYBENZOIC ACID, FE (II) ION, Gallate dioxygenase | 著者 | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | 登録日 | 2014-02-21 | 公開日 | 2014-04-30 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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3WR9
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![BU of 3wr9 by Molmil](/molmil-images/mine/3wr9) | Crystal structure of the Anaerobic DesB-Gallate complex | 分子名称: | 3,4,5-trihydroxybenzoic acid, FE (II) ION, Gallate dioxygenase | 著者 | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | 登録日 | 2014-02-21 | 公開日 | 2014-04-30 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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3WRA
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![BU of 3wra by Molmil](/molmil-images/mine/3wra) | Crystal structure of the desB-Gallate complex exposed to Aerobic Atomosphere | 分子名称: | FE (II) ION, Gallate dioxygenase | 著者 | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | 登録日 | 2014-02-21 | 公開日 | 2014-04-30 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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3WR3
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![BU of 3wr3 by Molmil](/molmil-images/mine/3wr3) | Crystal structure of the anaerobic DesB-gallate complex | 分子名称: | 3,4,5-trihydroxybenzoic acid, FE (II) ION, Gallate dioxygenase | 著者 | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | 登録日 | 2014-02-13 | 公開日 | 2014-04-30 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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3WKU
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![BU of 3wku by Molmil](/molmil-images/mine/3wku) | Crystal structure of the anaerobic DesB-gallate complex | 分子名称: | 3,4,5-trihydroxybenzoic acid, FE (III) ION, Gallate dioxygenase | 著者 | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | 登録日 | 2013-10-31 | 公開日 | 2014-04-30 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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3WR8
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![BU of 3wr8 by Molmil](/molmil-images/mine/3wr8) | Crystal structure of DesB from Sphingobium sp. strain SYK-6 | 分子名称: | FE (II) ION, Gallate dioxygenase | 著者 | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | 登録日 | 2014-02-21 | 公開日 | 2014-04-30 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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3WPM
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![BU of 3wpm by Molmil](/molmil-images/mine/3wpm) | Crystal structure of the anaerobic DesB-gallate complex by co-crystallization | 分子名称: | 3,4,5-trihydroxybenzoic acid, FE (III) ION, Gallate dioxygenase | 著者 | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | 登録日 | 2014-01-14 | 公開日 | 2014-04-30 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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3WR4
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![BU of 3wr4 by Molmil](/molmil-images/mine/3wr4) | Crystal structure of the anaerobic DesB-gallate complex | 分子名称: | 3,4,5-trihydroxybenzoic acid, FE (III) ION, Gallate dioxygenase | 著者 | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | 登録日 | 2014-02-13 | 公開日 | 2014-04-30 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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3WRB
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![BU of 3wrb by Molmil](/molmil-images/mine/3wrb) | Crystal structure of the anaerobic H124F DESb-Gallate complex | 分子名称: | 3,4,5-trihydroxybenzoic acid, FE (II) ION, Gallate dioxygenase | 著者 | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | 登録日 | 2014-02-21 | 公開日 | 2014-04-30 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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1IZ1
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![BU of 1iz1 by Molmil](/molmil-images/mine/1iz1) | CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR | 分子名称: | LysR-type regulatory protein | 著者 | Muraoka, S, Okumura, R, Ogawa, N, Miyashita, K, Senda, T. | 登録日 | 2002-09-18 | 公開日 | 2003-05-06 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Crystal Structure of a Full-length LysR-type Transcriptional Regulator, CbnR: Unusual Combination of Two Subunit Forms and Molecular Bases for Causing and Changing DNA Bend J.Mol.Biol., 328, 2003
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1IXC
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![BU of 1ixc by Molmil](/molmil-images/mine/1ixc) | Crystal structure of CbnR, a LysR family transcriptional regulator | 分子名称: | LysR-type regulatory protein | 著者 | Muraoka, S, Okumura, R, Ogawa, N, Miyashita, K, Senda, T. | 登録日 | 2002-06-18 | 公開日 | 2003-06-18 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Crystal Structure of a Full-length LysR-type Transcriptional Regulator, CbnR: Unusual Combination of Two Subunit Forms and Molecular Bases for Causing and Changing DNA Bend J.Mol.Biol., 328, 2003
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7E4D
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![BU of 7e4d by Molmil](/molmil-images/mine/7e4d) | Crystal structure of PlDBR | 分子名称: | Double Bond Reductase | 著者 | Sugimoto, K, Senda, M, Senda, T. | 登録日 | 2021-02-11 | 公開日 | 2022-02-02 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Exploration and structure-based engineering of alkenal double bond reductases catalyzing the C alpha C beta double bond reduction of coniferaldehyde. N Biotechnol, 68, 2022
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7E18
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![BU of 7e18 by Molmil](/molmil-images/mine/7e18) | Crystal structure of SAR-CoV-2 3CL protease complex with inhibitor YH-53 | 分子名称: | 1,2-ETHANEDIOL, N-[(2S)-1-[[(2S)-1-(1,3-benzothiazol-2-yl)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-methoxy-1H-indole-2-carboxamide, Replicase polyprotein 1ab | 著者 | Senda, M, Konno, S, Hayashi, Y, Senda, T. | 登録日 | 2021-02-01 | 公開日 | 2021-06-23 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | 3CL Protease Inhibitors with an Electrophilic Arylketone Moiety as Anti-SARS-CoV-2 Agents. J.Med.Chem., 65, 2022
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7E19
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![BU of 7e19 by Molmil](/molmil-images/mine/7e19) | Crystal structure of SAR-CoV-2 3CL protease complex with inhibitor SH-5 | 分子名称: | (phenylmethyl) N-[(2S)-1-[[(2S)-1-[[(2S)-1-(1,3-benzothiazol-2-yl)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate, 3C-like proteinase | 著者 | Senda, M, Konno, S, Hayashi, Y, Senda, T. | 登録日 | 2021-02-01 | 公開日 | 2021-06-23 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.15 Å) | 主引用文献 | 3CL Protease Inhibitors with an Electrophilic Arylketone Moiety as Anti-SARS-CoV-2 Agents. J.Med.Chem., 65, 2022
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3A2M
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![BU of 3a2m by Molmil](/molmil-images/mine/3a2m) | CRYSTAL STRUCTURE OF DBJA (WILD TYPE Type I) | 分子名称: | CHLORIDE ION, Haloalkane dehalogenase, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose | 著者 | Sato, Y, Senda, T. | 登録日 | 2009-05-23 | 公開日 | 2010-05-26 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.84 Å) | 主引用文献 | Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering Angew.Chem.Int.Ed.Engl., 49, 2010
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3A2L
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![BU of 3a2l by Molmil](/molmil-images/mine/3a2l) | Crystal structure of DBJA (mutant dbja delta) | 分子名称: | CHLORIDE ION, GLYCEROL, Haloalkane dehalogenase, ... | 著者 | Sato, Y, Senda, T. | 登録日 | 2009-05-23 | 公開日 | 2010-05-26 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.78 Å) | 主引用文献 | Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering Angew.Chem.Int.Ed.Engl., 49, 2010
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3AFI
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![BU of 3afi by Molmil](/molmil-images/mine/3afi) | Crystal structure of DBJA (HIS-DBJA) | 分子名称: | CHLORIDE ION, Haloalkane dehalogenase | 著者 | Sato, Y, Senda, T. | 登録日 | 2010-03-02 | 公開日 | 2011-01-19 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering Angew.Chem.Int.Ed.Engl., 49, 2010
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3A2N
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![BU of 3a2n by Molmil](/molmil-images/mine/3a2n) | |
7C5W
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![BU of 7c5w by Molmil](/molmil-images/mine/7c5w) | |
7C5X
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![BU of 7c5x by Molmil](/molmil-images/mine/7c5x) | |
7C5V
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![BU of 7c5v by Molmil](/molmil-images/mine/7c5v) | |
7C5Y
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![BU of 7c5y by Molmil](/molmil-images/mine/7c5y) | |
7EM6
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![BU of 7em6 by Molmil](/molmil-images/mine/7em6) | Crystal structure of the PI5P4Kbeta N203D-ITP complex | 分子名称: | INOSINE-5'-DIPHOSPHATE, Phosphatidylinositol 5-phosphate 4-kinase type-2 beta, [[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(6-oxidanylidene-1~{H}-purin-9-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate | 著者 | Senda, M, Senda, T. | 登録日 | 2021-04-13 | 公開日 | 2022-03-30 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.95 Å) | 主引用文献 | The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity. Structure, 30, 2022
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7EM2
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![BU of 7em2 by Molmil](/molmil-images/mine/7em2) | Crystal structure of the PI5P4Kbeta-XTP complex | 分子名称: | Phosphatidylinositol 5-phosphate 4-kinase type-2 beta, [(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(oxidanylidene)-3~{H}-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate, [[(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(oxidanylidene)-3~{H}-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate | 著者 | Senda, M, Senda, T. | 登録日 | 2021-04-13 | 公開日 | 2022-03-30 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity. Structure, 30, 2022
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