Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8PDY
DownloadVisualize
BU of 8pdy by Molmil
E. coli RNA polymerase paused at ops site
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H.
登録日2023-06-13
公開日2024-04-24
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Concerted transformation of a hyper-paused transcription complex and its reinforcing protein.
Nat Commun, 15, 2024
8PFJ
DownloadVisualize
BU of 8pfj by Molmil
fully recruited RfaH bound to E. coli transcription complex paused at ops site (not fully complementary scaffold; alternative state of RfaH)
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H.
登録日2023-06-16
公開日2024-04-24
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Concerted transformation of a hyper-paused transcription complex and its reinforcing protein.
Nat Commun, 15, 2024
8PIM
DownloadVisualize
BU of 8pim by Molmil
fully recruited RfaH bound to E. coli transcription complex paused at ops site (not complementary scaffold)
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H.
登録日2023-06-22
公開日2024-04-24
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Concerted transformation of a hyper-paused transcription complex and its reinforcing protein.
Nat Commun, 15, 2024
8PEN
DownloadVisualize
BU of 8pen by Molmil
fully recruited RfaH bound to E. coli transcription complex paused at ops site (alternative state of RfaH)
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H.
登録日2023-06-14
公開日2024-04-24
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Concerted transformation of a hyper-paused transcription complex and its reinforcing protein.
Nat Commun, 15, 2024
8PH9
DownloadVisualize
BU of 8ph9 by Molmil
E. coli RNA polymerase paused at ops site (non-complementary scaffold)
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H.
登録日2023-06-19
公開日2024-04-24
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Concerted transformation of a hyper-paused transcription complex and its reinforcing protein.
Nat Commun, 15, 2024
8PHK
DownloadVisualize
BU of 8phk by Molmil
fully recruited RfaH bound to E. coli transcription complex paused at ops site
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H.
登録日2023-06-20
公開日2024-04-24
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Concerted transformation of a hyper-paused transcription complex and its reinforcing protein.
Nat Commun, 15, 2024
8PIB
DownloadVisualize
BU of 8pib by Molmil
autoinhibited RfaH bound to E. coli transcription complex paused at ops site (encounter complex)
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H.
登録日2023-06-21
公開日2024-04-24
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Concerted transformation of a hyper-paused transcription complex and its reinforcing protein.
Nat Commun, 15, 2024
8PFG
DownloadVisualize
BU of 8pfg by Molmil
autoinhibited RfaH bound to E. coli transcription complex paused at ops site (encounter complex), not fully complementary scaffold
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H.
登録日2023-06-15
公開日2024-04-24
最終更新日2024-11-20
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Concerted transformation of a hyper-paused transcription complex and its reinforcing protein.
Nat Commun, 15, 2024
8PEW
DownloadVisualize
BU of 8pew by Molmil
Rho-ATPgS-Psu complex III expanded
分子名称: MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Polarity suppression protein, ...
著者Gjorgjevikj, D, Wahl, M.C, Hilal, T, Loll, B.
登録日2023-06-15
公開日2024-06-26
最終更新日2025-01-22
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献The Psu protein of phage satellite P4 inhibits transcription termination factor rho by forced hyper-oligomerization.
Nat Commun, 16, 2025
8PEU
DownloadVisualize
BU of 8peu by Molmil
Rho-ATPgS-Psu complex III
分子名称: MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Polarity suppression protein, ...
著者Gjorgjevikj, D, Wahl, M.C, Hilal, T, Loll, B.
登録日2023-06-15
公開日2024-06-26
最終更新日2025-01-22
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献The Psu protein of phage satellite P4 inhibits transcription termination factor rho by forced hyper-oligomerization.
Nat Commun, 16, 2025
8PEX
DownloadVisualize
BU of 8pex by Molmil
Rho P167L-ATPgS-Psu complex II
分子名称: MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Polarity suppression protein, ...
著者Gjorgjevikj, D, Wahl, M.C, Hilal, T, Loll, B.
登録日2023-06-15
公開日2024-06-26
最終更新日2025-01-22
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献The Psu protein of phage satellite P4 inhibits transcription termination factor rho by forced hyper-oligomerization.
Nat Commun, 16, 2025
8PEY
DownloadVisualize
BU of 8pey by Molmil
Rho P167L-ATPgS-Psu complex II locked
分子名称: MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Polarity suppression protein, ...
著者Gjorgjevikj, D, Wahl, M.C, Hilal, T, Loll, B.
登録日2023-06-15
公開日2024-06-26
最終更新日2025-01-22
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献The Psu protein of phage satellite P4 inhibits transcription termination factor rho by forced hyper-oligomerization.
Nat Commun, 16, 2025
4PSO
DownloadVisualize
BU of 4pso by Molmil
Crystal structure of apeThermo-DBP-RP2 bound to ssDNA dT10
分子名称: PHOSPHATE ION, polydeoxyribonucleotide, ssDNA binding protein
著者Gahlei, H, von Moeller, H, Eppers, D, Loll, B, Wahl, M.C.
登録日2014-03-07
公開日2014-04-30
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Entrapment of DNA in an intersubunit tunnel system of a single-stranded DNA-binding protein.
Nucleic Acids Res., 42, 2014
4RKF
DownloadVisualize
BU of 4rkf by Molmil
Drosophila melanogaster Rab3 bound to GMPPNP
分子名称: MAGNESIUM ION, PENTAETHYLENE GLYCOL, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
著者Lardong, J.A, Driller, J.H, Depner, H, Weise, C, Petzoldt, A, Wahl, M.C, Sigrist, S.J, Loll, B.
登録日2014-10-13
公開日2014-12-10
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structures of Drosophila melanogaster Rab2 and Rab3 bound to GMPPNP.
Acta Crystallogr F Struct Biol Commun, 71, 2015
4OI2
DownloadVisualize
BU of 4oi2 by Molmil
C. Elegans Clp1 and ADP and Mg2+ (turnover state)
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NONAETHYLENE GLYCOL, ...
著者Dikfidan, A, Loll, B, Zeymer, C, Clausen, T, Meinhart, A.
登録日2014-01-18
公開日2014-05-14
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1.
Mol.Cell, 54, 2014
4RKE
DownloadVisualize
BU of 4rke by Molmil
Drosophila melanogaster Rab2 bound to GMPPNP
分子名称: GH01619p, MAGNESIUM ION, PENTAETHYLENE GLYCOL, ...
著者Lardong, J.A, Driller, J.H, Depner, H, Weise, C, Petzoldt, A, Wahl, M.C, Sigrist, S.J, Loll, B.
登録日2014-10-13
公開日2014-12-10
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.0006 Å)
主引用文献Structures of Drosophila melanogaster Rab2 and Rab3 bound to GMPPNP.
Acta Crystallogr F Struct Biol Commun, 71, 2015
4PSM
DownloadVisualize
BU of 4psm by Molmil
Crystal structure of pfuThermo-DBP-RP1 (crystal form II)
分子名称: SULFATE ION, ssDNA binding protein
著者Gahlei, H, von Moeller, H, Eppers, D, Loll, B, Wahl, M.C.
登録日2014-03-07
公開日2014-04-30
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Entrapment of DNA in an intersubunit tunnel system of a single-stranded DNA-binding protein.
Nucleic Acids Res., 42, 2014
4PSN
DownloadVisualize
BU of 4psn by Molmil
Crystal structure of apeThermo-DBP-RP2
分子名称: GLYCEROL, IMIDAZOLE, ssDNA binding protein
著者Gahlei, H, von Moeller, H, Eppers, D, Loll, B, Wahl, M.C.
登録日2014-03-07
公開日2014-04-30
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Entrapment of DNA in an intersubunit tunnel system of a single-stranded DNA-binding protein.
Nucleic Acids Res., 42, 2014
4PSL
DownloadVisualize
BU of 4psl by Molmil
Crystal structure of pfuThermo-DBP-RP1 (crystal form I)
分子名称: SULFATE ION, ssDNA binding protein
著者Gahlei, H, von Moeller, H, Eppers, D, Sohmen, D, Wilson, D.N, Loll, B, Wahl, M.C.
登録日2014-03-07
公開日2014-04-30
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Entrapment of DNA in an intersubunit tunnel system of a single-stranded DNA-binding protein.
Nucleic Acids Res., 42, 2014
6ZZ0
DownloadVisualize
BU of 6zz0 by Molmil
Structure of the borneol dehydrogenase of Salvia rosmarinus (apo)
分子名称: Borneol Dehydrogenase (salvia rosmarinus) apo structure
著者Dimos, N, Helmer, C.P.O, Loll, B.
登録日2020-08-03
公開日2021-02-17
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献A Structural View on the Stereospecificity of Plant Borneol-Type Dehydrogenases.
Chemcatchem, 13, 2021
6ZZT
DownloadVisualize
BU of 6zzt by Molmil
Structure of the borneol dehydrogenases of Salvia rosmarinus (high salt condition)
分子名称: BORNEOL DEHYDROGENASE, CHLORIDE ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Dimos, N, Helmer, C.P.O, Loll, B.
登録日2020-08-05
公開日2021-02-17
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献A Structural View on the Stereospecificity of Plant Borneol-Type Dehydrogenases.
Chemcatchem, 13, 2021
6ZYZ
DownloadVisualize
BU of 6zyz by Molmil
Structure of the borneol dehydrogenases of Salvia rosmarinus with NAD+
分子名称: (2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol, Borneol dehydrogenase from salvia rosmarinus, CHLORIDE ION, ...
著者Dimos, N, Helmer, C.P.O, Loll, B.
登録日2020-08-03
公開日2021-02-17
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献A Structural View on the Stereospecificity of Plant Borneol-Type Dehydrogenases.
Chemcatchem, 13, 2021
6ZWX
DownloadVisualize
BU of 6zwx by Molmil
Crystal structure of E. coli RNA helicase HrpA
分子名称: ATP-dependent RNA helicase HrpA
著者Grass, L.M, Wollenhaupt, J, Barthel, T, Loll, B, Wahl, M.C.
登録日2020-07-29
公開日2021-06-30
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Large-scale ratcheting in a bacterial DEAH/RHA-type RNA helicase that modulates antibiotics susceptibility.
Proc.Natl.Acad.Sci.USA, 118, 2021
6ZWW
DownloadVisualize
BU of 6zww by Molmil
Crystal structure of E. coli RNA helicase HrpA in complex with RNA
分子名称: ATP-dependent RNA helicase HrpA, CALCIUM ION, ssRNA
著者Grass, L.M, Wollenhaupt, J, Barthel, T, Loll, B, Wahl, M.C.
登録日2020-07-29
公開日2021-06-30
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.16 Å)
主引用文献Large-scale ratcheting in a bacterial DEAH/RHA-type RNA helicase that modulates antibiotics susceptibility.
Proc.Natl.Acad.Sci.USA, 118, 2021
7AO2
DownloadVisualize
BU of 7ao2 by Molmil
Crystal structure of CotB2 variant W288G in complex with alendronate
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE, CHLORIDE ION, ...
著者Dimos, N, Driller, R, Loll, B.
登録日2020-10-13
公開日2020-12-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献The Impression of a Nonexisting Catalytic Effect: The Role of CotB2 in Guiding the Complex Biosynthesis of Cyclooctat-9-en-7-ol.
J.Am.Chem.Soc., 142, 2020

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon