6IQY
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![BU of 6iqy by Molmil](/molmil-images/mine/6iqy) | High resolution structure of bilirubin oxidase from Myrothecium verrucaria - M467Q mutant, anaerobically prepared | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Bilirubin oxidase, ... | 著者 | Shibata, N, Akter, M, Higuchi, Y. | 登録日 | 2018-11-09 | 公開日 | 2018-11-21 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Redox Potential-Dependent Formation of an Unusual His-Trp Bond in Bilirubin Oxidase. Chemistry, 24, 2018
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2D5M
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3VQT
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![BU of 3vqt by Molmil](/molmil-images/mine/3vqt) | Crystal structure analysis of the translation factor RF3 | 分子名称: | GUANOSINE-5'-DIPHOSPHATE, Peptide chain release factor 3 | 著者 | Kihira, K, Shomura, Y, Shibata, N, Kitamura, M, Higuchi, Y. | 登録日 | 2012-03-30 | 公開日 | 2012-09-05 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal structure analysis of the translation factor RF3 (release factor 3) Febs Lett., 586, 2012
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3VR1
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![BU of 3vr1 by Molmil](/molmil-images/mine/3vr1) | Crystal structure analysis of the translation factor RF3 | 分子名称: | GUANOSINE-5',3'-TETRAPHOSPHATE, Peptide chain release factor 3 | 著者 | Kihira, K, Shomura, Y, Shibata, N, Kitamura, M, Higuchi, Y. | 登録日 | 2012-04-03 | 公開日 | 2012-09-05 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Crystal structure analysis of the translation factor RF3 (release factor 3) Febs Lett., 586, 2012
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2CYM
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![BU of 2cym by Molmil](/molmil-images/mine/2cym) | EFFECTS OF AMINO ACID SUBSTITUTION ON THREE-DIMENSIONAL STRUCTURE: AN X-RAY ANALYSIS OF CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS HILDENBOROUGH AT 2 ANGSTROMS RESOLUTION | 分子名称: | CYTOCHROME C3, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Morimoto, Y, Tani, T, Okumura, H, Higuchi, Y, Yasuoka, N. | 登録日 | 1993-09-29 | 公開日 | 1994-04-30 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Effects of amino acid substitution on three-dimensional structure: an X-ray analysis of cytochrome c3 from Desulfovibrio vulgaris Hildenborough at 2 A resolution. J.Biochem.(Tokyo), 110, 1991
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2E84
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![BU of 2e84 by Molmil](/molmil-images/mine/2e84) | Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F) in the presence of zinc ion | 分子名称: | High-molecular-weight cytochrome c, PROTOPORPHYRIN IX CONTAINING FE, SODIUM ION, ... | 著者 | Shibata, N, Suto, K, Sato, M, Morimoto, Y, Kitamura, M, Higuchi, Y. | 登録日 | 2007-01-17 | 公開日 | 2008-01-15 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F) To be Published
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2D5G
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1WUH
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![BU of 1wuh by Molmil](/molmil-images/mine/1wuh) | Three-Dimensional Structure Of The Ni-A State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ... | 著者 | Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y. | 登録日 | 2004-12-07 | 公開日 | 2005-12-07 | 最終更新日 | 2019-09-04 | 実験手法 | X-RAY DIFFRACTION (1.24 Å) | 主引用文献 | Structural basis for the activation process of [NiFe] hydrogenase from D.vulgaris Miyazaki F To be Published
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1WUJ
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![BU of 1wuj by Molmil](/molmil-images/mine/1wuj) | Three-Dimensional Structure Of The Ni-B State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F | 分子名称: | FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, MAGNESIUM ION, ... | 著者 | Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y. | 登録日 | 2004-12-07 | 公開日 | 2005-12-07 | 最終更新日 | 2019-09-04 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state Structure, 13, 2005
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2D4R
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![BU of 2d4r by Molmil](/molmil-images/mine/2d4r) | Crystal structure of TTHA0849 from Thermus thermophilus HB8 | 分子名称: | SULFATE ION, hypothetical protein TTHA0849 | 著者 | Nakabayashi, M, Shibata, N, Kuramitsu, S, Higuchi, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2005-10-23 | 公開日 | 2005-12-13 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Structure of a conserved hypothetical protein, TTHA0849 from Thermus thermophilus HB8, at 2.4 A resolution: a putative member of the StAR-related lipid-transfer (START) domain superfamily. Acta Crystallogr.,Sect.F, 61, 2005
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1WUK
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![BU of 1wuk by Molmil](/molmil-images/mine/1wuk) | High resolution Structure Of The Oxidized State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F | 分子名称: | (4R)-2-METHYLPENTANE-2,4-DIOL, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ... | 著者 | Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y. | 登録日 | 2004-12-07 | 公開日 | 2005-12-07 | 最終更新日 | 2019-09-04 | 実験手法 | X-RAY DIFFRACTION (1.1 Å) | 主引用文献 | Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state Structure, 13, 2005
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1WUL
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![BU of 1wul by Molmil](/molmil-images/mine/1wul) | High Resolution Structure Of The Reduced State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F | 分子名称: | (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, ... | 著者 | Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y. | 登録日 | 2004-12-07 | 公開日 | 2005-12-07 | 最終更新日 | 2019-09-04 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state Structure, 13, 2005
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1WUI
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![BU of 1wui by Molmil](/molmil-images/mine/1wui) | Ultra-High resolution Structure Of The Ni-A State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F | 分子名称: | (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, ... | 著者 | Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y. | 登録日 | 2004-12-07 | 公開日 | 2005-12-07 | 最終更新日 | 2019-09-04 | 実験手法 | X-RAY DIFFRACTION (1.04 Å) | 主引用文献 | Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state Structure, 13, 2005
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1UCR
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![BU of 1ucr by Molmil](/molmil-images/mine/1ucr) | Three-dimensional crystal structure of dissimilatory sulfite reductase D (DsrD) | 分子名称: | Protein dsvD, SULFATE ION | 著者 | Mizuno, N, Voordouw, G, Miki, K, Sarai, A, Higuchi, Y. | 登録日 | 2003-04-18 | 公開日 | 2003-10-14 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.2 Å) | 主引用文献 | Crystal Structure of Dissimilatory Sulfite Reductase D (DsrD) Protein-Possible Interaction with B- and Z-DNA by Its Winged-Helix Motif STRUCTURE, 11, 2003
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1RCP
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![BU of 1rcp by Molmil](/molmil-images/mine/1rcp) | CYTOCHROME C' | 分子名称: | CYTOCHROME C', PROTOPORPHYRIN IX CONTAINING FE | 著者 | Tahirov, T.H, Misaki, S, Meyer, T.E, Cusanovich, M.A, Higuchi, Y, Yasuoka, N. | 登録日 | 1995-08-23 | 公開日 | 1996-06-10 | 最終更新日 | 2024-06-05 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | High-resolution crystal structures of two polymorphs of cytochrome c' from the purple phototrophic bacterium rhodobacter capsulatus. J.Mol.Biol., 259, 1996
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1REP
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![BU of 1rep by Molmil](/molmil-images/mine/1rep) | CRYSTAL STRUCTURE OF REPLICATION INITIATOR PROTEIN REPE54 OF MINI-F PLASMID COMPLEXED WITH AN ITERON DNA | 分子名称: | DNA (5'-D(*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*T)-3'), DNA (5'-D(*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*T)-3'), MAGNESIUM ION, ... | 著者 | Komori, H, Matsunaga, F, Higuchi, Y, Ishiai, M, Wada, C, Miki, K. | 登録日 | 1999-04-29 | 公開日 | 2000-02-09 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Crystal structure of a prokaryotic replication initiator protein bound to DNA at 2.6 A resolution. EMBO J., 18, 1999
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3UAC
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![BU of 3uac by Molmil](/molmil-images/mine/3uac) | Multicopper Oxidase CueO mutant C500SE506Q (data4) | 分子名称: | ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION, ... | 著者 | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | 登録日 | 2011-10-21 | 公開日 | 2012-04-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | An O-centered structure of the trinuclear copper center in the Cys500Ser/Glu506Gln mutant of CueO and structural changes in low to high X-ray dose conditions. Angew.Chem.Int.Ed.Engl., 51, 2012
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3WYO
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![BU of 3wyo by Molmil](/molmil-images/mine/3wyo) | Heterodimeric myoglobin formed by domain swapping | 分子名称: | Myoglobin, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Lin, Y.W, Nagao, S, Zhang, M, Shomura, Y, Higuchi, Y, Hirota, S. | 登録日 | 2014-09-04 | 公開日 | 2014-11-19 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Rational design of heterodimeric protein using domain swapping for myoglobin. Angew.Chem.Int.Ed.Engl., 54, 2015
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3UAD
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![BU of 3uad by Molmil](/molmil-images/mine/3uad) | Multicopper Oxidase CueO mutant C500SE506Q (data5) | 分子名称: | ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION, ... | 著者 | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | 登録日 | 2011-10-21 | 公開日 | 2012-04-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.1 Å) | 主引用文献 | An O-centered structure of the trinuclear copper center in the Cys500Ser/Glu506Gln mutant of CueO and structural changes in low to high X-ray dose conditions. Angew.Chem.Int.Ed.Engl., 51, 2012
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3UAE
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![BU of 3uae by Molmil](/molmil-images/mine/3uae) | Multicopper Oxidase CueO mutant C500SE506Q (data6) | 分子名称: | ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION, ... | 著者 | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | 登録日 | 2011-10-21 | 公開日 | 2012-04-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | An O-centered structure of the trinuclear copper center in the Cys500Ser/Glu506Gln mutant of CueO and structural changes in low to high X-ray dose conditions. Angew.Chem.Int.Ed.Engl., 51, 2012
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3UAA
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![BU of 3uaa by Molmil](/molmil-images/mine/3uaa) | Multicopper Oxidase CueO mutant C500SE506Q (data1) | 分子名称: | ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION, ... | 著者 | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | 登録日 | 2011-10-21 | 公開日 | 2012-04-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | An O-centered structure of the trinuclear copper center in the Cys500Ser/Glu506Gln mutant of CueO and structural changes in low to high X-ray dose conditions. Angew.Chem.Int.Ed.Engl., 51, 2012
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3UAB
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![BU of 3uab by Molmil](/molmil-images/mine/3uab) | Multicopper Oxidase CueO mutant C500SE506Q (data2) | 分子名称: | ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION, ... | 著者 | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | 登録日 | 2011-10-21 | 公開日 | 2012-04-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | An O-centered structure of the trinuclear copper center in the Cys500Ser/Glu506Gln mutant of CueO and structural changes in low to high X-ray dose conditions. Angew.Chem.Int.Ed.Engl., 51, 2012
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3UX0
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![BU of 3ux0 by Molmil](/molmil-images/mine/3ux0) | Crystal structure of human 14-3-3 sigma in complex with TASK-3 peptide and stabilizer Fusicoccin H | 分子名称: | (4R,5R,6R,6aS,9S,9aE,10aR)-5-hydroxy-9-(hydroxymethyl)-6,10a-dimethyl-3-(propan-2-yl)-1,2,4,5,6,6a,7,8,9,10a-decahydrodicyclopenta[a,d][8]annulen-4-yl alpha-D-gulopyranoside, 14-3-3 protein sigma, CHLORIDE ION, ... | 著者 | Thiel, P, Bartel, M, Anders, C, Higuchi, Y, Schumacher, B, Kato, N, Ottmann, C. | 登録日 | 2011-12-03 | 公開日 | 2013-01-02 | 最終更新日 | 2013-05-01 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | A semisynthetic fusicoccane stabilizes a protein-protein interaction and enhances the expression of k(+) channels at the cell surface. Chem.Biol., 20, 2013
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6K7C
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![BU of 6k7c by Molmil](/molmil-images/mine/6k7c) | Dimeric Shewanella violacea cytochrome c5 | 分子名称: | HEME C, NITRATE ION, Soluble cytochrome cA | 著者 | Yang, H, Yamanaka, M, Nagao, S, Yasuhara, K, Shibata, N, Higuchi, Y, Hirota, S. | 登録日 | 2019-06-07 | 公開日 | 2019-09-04 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.15 Å) | 主引用文献 | Protein surface charge effect on 3D domain swapping in cells for c-type cytochromes. Biochim Biophys Acta Proteins Proteom, 1867, 2019
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2DCF
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![BU of 2dcf by Molmil](/molmil-images/mine/2dcf) | Crystal structure of 6-aminohexanoate-dimer hydrolase S112A/G181D/H266N mutant with substrate | 分子名称: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-AMINOHEXANOIC ACID, 6-aminohexanoate-dimer hydrolase, ... | 著者 | Ohki, T, Shibata, N, Higuchi, Y, Takeo, M, Negoro, S. | 登録日 | 2006-01-06 | 公開日 | 2007-01-09 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | Nylon-oligomer degrading enzyme/substrate complex: catalytic mechanism of 6-aminohexanoate-dimer hydrolase J.Mol.Biol., 370, 2007
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