Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6SZ3
DownloadVisualize
BU of 6sz3 by Molmil
Crystal structure of YTHDC1 with fragment 4 (DHU_DC1_158)
分子名称: SULFATE ION, YTH domain-containing protein 1, ~{N}-methyl-5,6,7,8-tetrahydroquinolin-4-amine
著者Bedi, R.K, Huang, D, Sledz, P, Caflisch, A.
登録日2019-10-01
公開日2020-03-04
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献Selectively Disrupting m6A-Dependent Protein-RNA Interactions with Fragments.
Acs Chem.Biol., 15, 2020
6T03
DownloadVisualize
BU of 6t03 by Molmil
Crystal structure of YTHDC1 with fragment 16 (DHU_DC1_017)
分子名称: 1,3-dihydroimidazole-2-thione, SULFATE ION, YTHDC1
著者Bedi, R.K, Huang, D, Sledz, P, Caflisch, A.
登録日2019-10-02
公開日2020-03-04
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Selectively Disrupting m6A-Dependent Protein-RNA Interactions with Fragments.
Acs Chem.Biol., 15, 2020
2MUF
DownloadVisualize
BU of 2muf by Molmil
Binding activity, structure, and immunogenicity of synthetic peptides derived from Plasmodium falciparum CelTOS and TRSP proteins
分子名称: TRSP
著者Curtidor, H, Arevalo-Pinzon, G, Bermudez, A, Calderon, D, Vanegas, M, Patino, L, Patarroyo, M.
登録日2014-09-09
公開日2015-09-23
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Binding activity, structure, and immunogenicity of synthetic peptides derived from Plasmodium falciparum CelTOS and TRSP proteins.
Amino Acids, 43, 2012
8AON
DownloadVisualize
BU of 8aon by Molmil
Oxidoreductase fragment of human QSOX1 in complex with a Fab fragment of a humanized anti-QSOX1 antibody
分子名称: GLYCEROL, Heavy chain, Light chain, ...
著者Khmelnitsky, L, Fass, D.
登録日2022-08-08
公開日2023-08-02
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Reliable energy-based antibody humanization and stabilization
To Be Published
3ZV2
DownloadVisualize
BU of 3zv2 by Molmil
Human protein-tyrosine phosphatase 1b C215A, S216A mutant
分子名称: Tyrosine-protein phosphatase non-receptor type 1
著者Barford, D, Salmeen, A, Tonks, N.K.
登録日2011-07-22
公開日2011-08-31
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Conformation-sensing antibodies stabilize the oxidized form of PTP1B and inhibit its phosphatase activity.
Cell, 147, 2011
1FPY
DownloadVisualize
BU of 1fpy by Molmil
CRYSTAL STRUCTURE OF GLUTAMINE SYNTHETASE FROM SALMONELLA TYPHIMURIUM WITH INHIBITOR PHOSPHINOTHRICIN
分子名称: ADENOSINE-5'-DIPHOSPHATE, GLUTAMINE SYNTHETASE, MANGANESE (II) ION, ...
著者Gill, H.S, Eisenberg, D.
登録日2000-08-31
公開日2001-04-04
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献The crystal structure of phosphinothricin in the active site of glutamine synthetase illuminates the mechanism of enzymatic inhibition.
Biochemistry, 40, 2001
6STY
DownloadVisualize
BU of 6sty by Molmil
Human REXO2 exonuclease in complex with RNA.
分子名称: CALCIUM ION, Oligoribonuclease, mitochondrial, ...
著者Malik, D, Szewczyk, M, Szczesny, R, Nowotny, M.
登録日2019-09-12
公開日2020-04-29
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Human REXO2 controls short mitochondrial RNAs generated by mtRNA processing and decay machinery to prevent accumulation of double-stranded RNA.
Nucleic Acids Res., 48, 2020
6SK5
DownloadVisualize
BU of 6sk5 by Molmil
Cryo-EM structure of rhinovirus-B5 complexed to antiviral OBR-5-340
分子名称: 6-phenyl-~{N}3-[4-(trifluoromethyl)phenyl]-1~{H}-pyrazolo[3,4-d]pyrimidine-3,4-diamine, Rhinovirus B5 VP1, Rhinovirus B5 VP2, ...
著者Wald, J, Goessweiner-Mohr, N, Blaas, D, Pasin, M.
登録日2019-08-14
公開日2019-09-04
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Cryo-EM structure of pleconaril-resistant rhinovirus-B5 complexed to the antiviral OBR-5-340 reveals unexpected binding site.
Proc.Natl.Acad.Sci.USA, 116, 2019
6SUF
DownloadVisualize
BU of 6suf by Molmil
Structure of Photorhabdus luminescens Tc holotoxin pore
分子名称: TcdA1, TcdB2,TccC3
著者Roderer, D, Raunser, S.
登録日2019-09-13
公開日2019-11-06
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure of a Tc holotoxin pore provides insights into the translocation mechanism.
Proc.Natl.Acad.Sci.USA, 116, 2019
2N1C
DownloadVisualize
BU of 2n1c by Molmil
Structure of PvHCt, an antimicrobial peptide from shrimp litopenaeus vannamei
分子名称: Hemocyanin subunit L2
著者Petit, V.W, Rolland, J.L, Blond, A, Djediat, C, Peduzzi, J, Goulard, C, Bachere, E, Dupont, J, Destoumieux-Garzon, D, Rebuffat, S.
登録日2015-03-27
公開日2015-05-27
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献A hemocyanin-derived antimicrobial peptide from the penaeid shrimp adopts an alpha-helical structure that specifically permeabilizes fungal membranes.
Biochim.Biophys.Acta, 1860, 2015
6SX7
DownloadVisualize
BU of 6sx7 by Molmil
Crystal Structure of the Voltage-Gated Sodium Channel NavMs (F208L) (2.2 Angstrom resolution)
分子名称: 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE, DODECAETHYLENE GLYCOL, HEGA-10, ...
著者Sula, A, Hollingworth, D, Wallace, B.A.
登録日2019-09-25
公開日2021-02-03
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A tamoxifen receptor within a voltage-gated sodium channel.
Mol.Cell, 81, 2021
3ZJC
DownloadVisualize
BU of 3zjc by Molmil
Crystal structure of GMPPNP-bound human GIMAP7 L100Q variant
分子名称: GTPASE IMAP FAMILY MEMBER 7, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
著者Schwefel, D, Daumke, O.
登録日2013-01-17
公開日2013-03-13
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Structural Insights Into the Mechanism of Gtpase Activation in the Gimap Family.
Structure, 21, 2013
3JBS
DownloadVisualize
BU of 3jbs by Molmil
eL6 protein from yeast 60S ribosomal subunit
分子名称: eL6
著者Passos, D.O, Lyumkis, D.
登録日2015-10-13
公開日2015-10-28
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Single-particle cryoEM analysis at near-atomic resolution from several thousand asymmetric subunits.
J.Struct.Biol., 192, 2015
6SKZ
DownloadVisualize
BU of 6skz by Molmil
Structure of the closed conformation of CtTel1
分子名称: MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Serine/threonine-protein kinase Tel1
著者Jansma, M, Eustermann, S.E, Kostrewa, D, Lammens, K, Hopfner, K.P.
登録日2019-08-16
公開日2019-10-30
最終更新日2020-01-15
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Near-Complete Structure and Model of Tel1ATM from Chaetomium thermophilum Reveals a Robust Autoinhibited ATP State.
Structure, 28, 2020
6SXG
DownloadVisualize
BU of 6sxg by Molmil
Crystal Structure of the Voltage-Gated Sodium Channel NavMs in complex with 4-hydroxytamoxifen (2.4 Angstrom resolution)
分子名称: 4-HYDROXYTAMOXIFEN, DODECAETHYLENE GLYCOL, HEGA-10, ...
著者Sula, A, Hollingworth, D, Wallace, B.A.
登録日2019-09-25
公開日2021-02-03
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献A tamoxifen receptor within a voltage-gated sodium channel.
Mol.Cell, 81, 2021
3CQN
DownloadVisualize
BU of 3cqn by Molmil
Crystal Structure of the Lipocalin domain of Violaxanthin de-epoxidase (VDE) at pH7
分子名称: Violaxanthin de-epoxidase, chloroplast
著者Arnoux, P, Morosinotto, T, Pignol, D.
登録日2008-04-03
公開日2009-04-21
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A structural basis for the pH-dependent xanthophyll cycle in Arabidopsis thaliana.
Plant Cell, 21, 2009
3JCD
DownloadVisualize
BU of 3jcd by Molmil
Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Zhang, D, Yan, K, Liu, G, Song, G, Luo, J, Shi, Y, Cheng, E, Wu, S, Jiang, T, Low, J, Gao, N, Qin, Y.
登録日2015-12-01
公開日2016-01-13
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献EF4 disengages the peptidyl-tRNA CCA end and facilitates back-translocation on the 70S ribosome
Nat. Struct. Mol. Biol., 23, 2016
3JD1
DownloadVisualize
BU of 3jd1 by Molmil
Glutamate dehydrogenase in complex with NADH, closed conformation
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Glutamate dehydrogenase 1, mitochondrial
著者Borgnia, M.J, Banerjee, S, Merk, A, Matthies, D, Bartesaghi, A, Rao, P, Pierson, J, Earl, L.A, Falconieri, V, Subramaniam, S, Milne, J.L.S.
登録日2016-03-28
公開日2016-04-27
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Using Cryo-EM to Map Small Ligands on Dynamic Metabolic Enzymes: Studies with Glutamate Dehydrogenase.
Mol.Pharmacol., 89, 2016
3ZNH
DownloadVisualize
BU of 3znh by Molmil
Crimean Congo Hemorrhagic Fever Virus OTU domain in complex with ubiquitin-propargyl.
分子名称: POLYUBIQUITIN-B, UBIQUITIN THIOESTERASE
著者Ekkebus, R, vanKasteren, S.I, Kulathu, Y, Scholten, A, Berlin, I, deJong, A, Goerdayal, G, Neefjes, J, Heck, A.J.R, Komander, D, Ovaa, H.
登録日2013-02-14
公開日2013-02-27
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献On Terminal Alkynes that Can React with Active-Site Cysteine Nucleophiles in Proteases.
J.Am.Chem.Soc., 135, 2013
2MSK
DownloadVisualize
BU of 2msk by Molmil
Solution Structure and Chemical Shift Assignments for BeF3 activated Receiver Domain of Nitrogen Regulatory Protein C (NtrC) at 35C
分子名称: Nitrogen regulation protein NR(I)
著者Clarkson, M.W, Pontiggia, F, Villali, J, Kern, D.
登録日2014-08-04
公開日2015-07-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Free energy landscape of activation in a signalling protein at atomic resolution.
Nat Commun, 6, 2015
3ZGC
DownloadVisualize
BU of 3zgc by Molmil
crystal structure of the KEAP1-NEH2 complex
分子名称: ACETATE ION, KELCH-LIKE ECH-ASSOCIATED PROTEIN 1, NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR 2
著者Hoerer, S, Reinert, D, Ostmann, K, Hoevels, Y, Nar, H.
登録日2012-12-17
公開日2013-06-12
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal-Contact Engineering to Obtain a Crystal Form of the Kelch Domain of Human Keap1 Suitable for Ligand-Soaking Experiments.
Acta Crystallogr.,Sect.F, 69, 2013
6SLZ
DownloadVisualize
BU of 6slz by Molmil
Crystal structure of human ROR gamma LBD in complex with a (quinolinoxymethyl)benzamide inverse agonist
分子名称: (2~{S})-1-[2,4-bis(chloranyl)-3-[[2-methyl-4-(trifluoromethyl)quinolin-8-yl]oxymethyl]phenyl]carbonyl-~{N}-methyl-pyrrolidine-2-carboxamide, Nuclear receptor ROR-gamma
著者Amaudrut, J, Argiriadi, M.A, Barth, M, Breinlinger, E.C, Calderwood, D.J, Cusack, K.P, Kort, M.E, Montalbetti, C, Potin, D, Poupardin, O, Spitzer, L.
登録日2019-08-21
公開日2020-09-09
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of human ROR gamma LBD in complex with a (quinolinoxymethyl)benzamide inverse agonist
To Be Published
1FMN
DownloadVisualize
BU of 1fmn by Molmil
SOLUTION STRUCTURE OF FMN-RNA APTAMER COMPLEX, NMR, 5 STRUCTURES
分子名称: FLAVIN MONONUCLEOTIDE, RNA (5'-R(*GP*GP*CP*GP*UP*GP*UP*AP*GP*GP *AP*UP*AP*UP*GP*CP*UP*UP*CP*GP*GP*CP*AP*GP*AP*AP*GP *GP*AP*CP*AP*CP*GP*CP*C)-3')
著者Fan, P, Suri, A.K, Fiala, R, Live, D, Patel, D.J.
登録日1995-12-04
公開日1996-07-11
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Molecular recognition in the FMN-RNA aptamer complex.
J.Mol.Biol., 258, 1996
3CTA
DownloadVisualize
BU of 3cta by Molmil
Crystal structure of riboflavin kinase from Thermoplasma acidophilum
分子名称: Riboflavin kinase
著者Bonanno, J.B, Rutter, M, Bain, K.T, Mendoza, M, Romero, R, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2008-04-11
公開日2008-04-29
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of riboflavin kinase from Thermoplasma acidophilum.
To be Published
1FRA
DownloadVisualize
BU of 1fra by Molmil
TERTIARY STRUCTURE OF ERABUTOXIN B IN AQUEOUS SOLUTION ELUCIDATED BY TWO-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE
分子名称: ERABUTOXIN B
著者Hatanaka, H, Kohda, D, Inagaki, F.
登録日1994-03-28
公開日1994-06-22
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Tertiary structure of erabutoxin b in aqueous solution as elucidated by two-dimensional nuclear magnetic resonance.
J.Mol.Biol., 240, 1994

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon