8JH0
 
 | | Crystal structure of the light-driven sodium pump IaNaR | | 分子名称: | RETINAL, Xanthorhodopsin | | 著者 | Hashimoto, T, Kato, K, Tanaka, Y, Yao, M, Kikukawa, T. | | 登録日 | 2023-05-22 | | 公開日 | 2023-11-01 | | 最終更新日 | 2023-12-06 | | 実験手法 | X-RAY DIFFRACTION (2.79 Å) | | 主引用文献 | Multistep conformational changes leading to the gate opening of light-driven sodium pump rhodopsin.
J.Biol.Chem., 299, 2023
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5AYE
 | | Crystal structure of Ruminococcus albus beta-(1,4)-mannooligosaccharide phosphorylase (RaMP2) in complexes with phosphate and beta-(1,4)-mannobiose | | 分子名称: | Beta-1,4-mannooligosaccharide phosphorylase, PHOSPHATE ION, beta-D-mannopyranose-(1-4)-beta-D-mannopyranose | | 著者 | Ye, Y, Saburi, W, Kato, K, Yao, M. | | 登録日 | 2015-08-13 | | 公開日 | 2016-03-23 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Structural insights into the difference in substrate recognition of two mannoside phosphorylases from two GH130 subfamilies.
Febs Lett., 590, 2016
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5AYD
 | | Crystal structure of Ruminococcus albus beta-(1,4)-mannooligosaccharide phosphorylase (RaMP2) in complexes with phosphate | | 分子名称: | Beta-1,4-mannooligosaccharide phosphorylase, PHOSPHATE ION | | 著者 | Ye, Y, Saburi, W, Kato, K, Yao, M. | | 登録日 | 2015-08-13 | | 公開日 | 2016-03-23 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Structural insights into the difference in substrate recognition of two mannoside phosphorylases from two GH130 subfamilies.
Febs Lett., 590, 2016
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5AYC
 | | Crystal structure of Ruminococcus albus 4-O-beta-D-mannosyl-D-glucose phosphorylase (RaMP1) in complexes with sulfate and 4-O-beta-D-mannosyl-D-glucose | | 分子名称: | 4-O-beta-D-mannosyl-D-glucose phosphorylase, SULFATE ION, beta-D-mannopyranose-(1-4)-beta-D-glucopyranose | | 著者 | Ye, Y, Saburi, W, Kato, K, Yao, M. | | 登録日 | 2015-08-13 | | 公開日 | 2016-03-23 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Structural insights into the difference in substrate recognition of two mannoside phosphorylases from two GH130 subfamilies.
Febs Lett., 590, 2016
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5AY9
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2JZ4
 | | Putative 32 kDa myrosinase binding protein At3g16450.1 from Arabidopsis thaliana | | 分子名称: | Jasmonate inducible protein isolog | | 著者 | Takeda, N, Sugimori, N, Torizawa, T, Terauchi, T, Ono, A.M, Yagi, H, Yamaguchi, Y, Kato, K, Ikeya, T, Guntert, P, Aceti, D.J, Markley, J.L, Kainosho, M, Center for Eukaryotic Structural Genomics (CESG) | | 登録日 | 2007-12-28 | | 公開日 | 2008-02-19 | | 最終更新日 | 2024-05-08 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Structure of the putative 32 kDa myrosinase-binding protein from Arabidopsis (At3g16450.1) determined by SAIL-NMR.
Febs J., 275, 2008
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5H18
 | | Crystal structure of catalytic domain of UGGT (UDP-glucose-bound form) from Thermomyces dupontii | | 分子名称: | CALCIUM ION, GLYCEROL, UGGT, ... | | 著者 | Satoh, T, Zhu, T, Toshimori, T, Kamikubo, H, Uchihashi, T, Kato, K. | | 登録日 | 2016-10-08 | | 公開日 | 2017-09-27 | | 最終更新日 | 2017-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | | 主引用文献 | Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT.
Sci Rep, 7, 2017
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5Y7F
 | | Crystal structure of catalytic domain of UGGT (UDP-bound form) from Thermomyces dupontii | | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, UGGT, ... | | 著者 | Satoh, T, Song, C, Zhu, T, Toshimori, T, Murata, K, Hayashi, Y, Kamikubo, H, Uchihashi, T, Kato, K. | | 登録日 | 2017-08-17 | | 公開日 | 2017-09-27 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.35 Å) | | 主引用文献 | Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT.
Sci Rep, 7, 2017
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5Y7O
 | | Crystal structure of folding sensor region of UGGT from Thermomyces dupontii | | 分子名称: | UGGT | | 著者 | Satoh, T, Song, C, Zhu, T, Toshimori, T, Murata, K, Hayashi, Y, Kamikubo, H, Uchihashi, T, Kato, K. | | 登録日 | 2017-08-17 | | 公開日 | 2017-09-27 | | 最終更新日 | 2017-11-01 | | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | | 主引用文献 | Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT.
Sci Rep, 7, 2017
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5DKZ
 | | Crystal structure of glucosidase II alpha subunit (alpha3-Glc2-bound from) | | 分子名称: | Alpha glucosidase-like protein, alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose | | 著者 | Satoh, T, Toshimori, T, Yan, G, Yamaguchi, T, Kato, K. | | 登録日 | 2015-09-04 | | 公開日 | 2016-01-27 | | 最終更新日 | 2020-07-29 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control.
Sci Rep, 6, 2016
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5DKX
 | | Crystal structure of glucosidase II alpha subunit (Tris-bound from) | | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha glucosidase-like protein, CHLORIDE ION | | 著者 | Satoh, T, Toshimori, T, Yan, G, Yamaguchi, T, Kato, K. | | 登録日 | 2015-09-04 | | 公開日 | 2016-01-27 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | | 主引用文献 | Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control.
Sci Rep, 6, 2016
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1IYF
 | | Solution structure of ubiquitin-like domain of human parkin | | 分子名称: | parkin | | 著者 | Sakata, E, Yamaguchi, Y, Kurimoto, E, Kikuchi, J, Yokoyama, S, Kawahara, H, Yokosawa, H, Hattori, N, Mizuno, Y, Tanaka, K, Kato, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2002-08-13 | | 公開日 | 2003-03-25 | | 最終更新日 | 2023-12-27 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Parkin binds the Rpn10 subunit of 26S proteasomes through its ubiquitin-like domain
EMBO REP., 4, 2003
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5DL0
 | | Crystal structure of glucosidase II alpha subunit (Glc1Man2-bound from) | | 分子名称: | Alpha glucosidase-like protein, alpha-D-glucopyranose-(1-3)-alpha-D-mannopyranose | | 著者 | Satoh, T, Toshimori, T, Yan, G, Yamaguchi, T, Kato, K. | | 登録日 | 2015-09-04 | | 公開日 | 2016-01-27 | | 最終更新日 | 2020-07-29 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control.
Sci Rep, 6, 2016
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5CRW
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5DKY
 | | Crystal structure of glucosidase II alpha subunit (DNJ-bound from) | | 分子名称: | 1-DEOXYNOJIRIMYCIN, Alpha glucosidase-like protein | | 著者 | Satoh, T, Toshimori, T, Yan, G, Yamaguchi, T, Kato, K. | | 登録日 | 2015-09-04 | | 公開日 | 2016-01-27 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control.
Sci Rep, 6, 2016
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6JPT
 | | Crystal structure of human PAC3 homodimer (trigonal form) | | 分子名称: | POTASSIUM ION, Proteasome assembly chaperone 3, THIOCYANATE ION | | 著者 | Satoh, T, Yagi-Utsumi, M, Okamoto, K, Kurimoto, E, Tanaka, K, Kato, K. | | 登録日 | 2019-03-27 | | 公開日 | 2019-05-29 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (0.96 Å) | | 主引用文献 | Molecular and Structural Basis of the Proteasome alpha Subunit Assembly Mechanism Mediated by the Proteasome-Assembling Chaperone PAC3-PAC4 Heterodimer.
Int J Mol Sci, 20, 2019
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8IN4
 | | Eisenia hydrolysis-enhancing protein from Aplysia kurodai | | 分子名称: | 25 kDa polyphenol-binding protein, ACETYL GROUP, GLYCEROL | | 著者 | Sun, X.M, Ye, Y.X, Kato, K, Yu, J, Yao, M. | | 登録日 | 2023-03-08 | | 公開日 | 2023-11-15 | | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | | 主引用文献 | Structural basis of EHEP-mediated offense against phlorotannin-induced defense from brown algae to protect aku BGL activity.
Elife, 12, 2023
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8IN1
 | | beta-glucosidase protein from Aplysia kurodai | | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-Glucosidase, alpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | | 著者 | Sun, X.M, Ye, Y.X, Kato, K, Yu, J, Yao, M. | | 登録日 | 2023-03-08 | | 公開日 | 2023-11-15 | | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | | 主引用文献 | Structural basis of EHEP-mediated offense against phlorotannin-induced defense from brown algae to protect aku BGL activity.
Elife, 12, 2023
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8IN6
 | | Eisenia hydrolysis-enhancing protein from Aplysia kurodai complex with tannic acid | | 分子名称: | 25 kDa polyphenol-binding protein, BETA-1,2,3,4,6-PENTA-O-GALLOYL-D-GLUCOPYRANOSE | | 著者 | Sun, X.M, Ye, Y.X, Kato, K, Yu, J, Yao, M. | | 登録日 | 2023-03-08 | | 公開日 | 2023-11-15 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Structural basis of EHEP-mediated offense against phlorotannin-induced defense from brown algae to protect aku BGL activity.
Elife, 12, 2023
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8IN3
 | | Eisenia hydrolysis-enhancing protein from Aplysia kurodai | | 分子名称: | 25 kDa polyphenol-binding protein, GLYCEROL | | 著者 | Sun, X.M, Ye, Y.X, Kato, K, Yu, J, Yao, M. | | 登録日 | 2023-03-08 | | 公開日 | 2023-11-15 | | 実験手法 | X-RAY DIFFRACTION (1.15 Å) | | 主引用文献 | Structural basis of EHEP-mediated offense against phlorotannin-induced defense from brown algae to protect aku BGL activity.
Elife, 12, 2023
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7Y8Q
 | | Amyloid-beta assemblage on GM1-containing membranes | | 分子名称: | Amyloid-beta protein 40 | | 著者 | Yagi-Utsumi, M, Itoh, S.G, Okumura, H, Yanagisawa, K, Kato, K, Nishimura, K. | | 登録日 | 2022-06-24 | | 公開日 | 2023-07-05 | | 最終更新日 | 2024-05-15 | | 実験手法 | SOLID-STATE NMR | | 主引用文献 | The Double-Layered Structure of Amyloid-beta Assemblage on GM1-Containing Membranes Catalytically Promotes Fibrillization.
Acs Chem Neurosci, 14, 2023
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4YHD
 | | Staphylococcal alpha-hemolysin H35A mutant monomer | | 分子名称: | Alpha-hemolysin, CHLORIDE ION | | 著者 | Sugawara, T, Kato, K, Tanaka, Y, Yao, M. | | 登録日 | 2015-02-27 | | 公開日 | 2015-10-21 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (2.801 Å) | | 主引用文献 | Structural basis for pore-forming mechanism of staphylococcal alpha-hemolysin
Toxicon, 108, 2015
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5AXM
 | | Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) | | 分子名称: | MAGNESIUM ION, RNA (75-MER), tRNA(His)-5'-guanylyltransferase (Thg1) like protein | | 著者 | Kimura, S, Suzuki, T, Yu, J, Kato, K, Yao, M. | | 登録日 | 2015-07-31 | | 公開日 | 2016-08-03 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.21 Å) | | 主引用文献 | Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein
Sci Adv, 2, 2016
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5AXL
 | | Crystal structure of Thg1 like protein (TLP) with GTP | | 分子名称: | GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, tRNA(His)-5'-guanylyltransferase (Thg1) like protein | | 著者 | Kimura, S, Suzuki, T, Yu, J, Kato, K, Yao, M. | | 登録日 | 2015-07-31 | | 公開日 | 2016-08-03 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.998 Å) | | 主引用文献 | Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein
Sci Adv, 2, 2016
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5AXK
 | | Crystal structure of Thg1 like protein (TLP) | | 分子名称: | GLYCEROL, tRNA(His)-5'-guanylyltransferase (Thg1) like protein | | 著者 | Kimura, S, Suzuki, T, Yu, J, Kato, K, Yao, M. | | 登録日 | 2015-07-31 | | 公開日 | 2016-08-03 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.29 Å) | | 主引用文献 | Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein
Sci Adv, 2, 2016
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