1UC3
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3A24
| Crystal structure of BT1871 retaining glycosidase | 分子名称: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, alpha-galactosidase | 著者 | Okuyama, M, Kitamura, M, Hondoh, H, Tanaka, I, Yao, M. | 登録日 | 2009-04-28 | 公開日 | 2009-10-06 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Catalytic mechanism of retaining alpha-galactosidase belonging to glycoside hydrolase family 97. J.Mol.Biol., 392, 2009
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1UCC
| Crystal structure of the Ribonuclease MC1 from bitter gourd seeds complexed with 3'-UMP. | 分子名称: | 3'-URIDINEMONOPHOSPHATE, Ribonuclease MC | 著者 | Suzuki, A, Yao, M, Tanaka, I, Numata, T, Kikukawa, S, Yamasaki, N, Kimura, M. | 登録日 | 2003-04-10 | 公開日 | 2003-04-29 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.77 Å) | 主引用文献 | Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity Biochem.Biophys.Res.Commun., 275, 2000
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1WMI
| Crystal structure of archaeal RelE-RelB complex from Pyrococcus horikoshii OT3 | 分子名称: | hypothetical protein PHS013, hypothetical protein PHS014 | 著者 | Takagi, H, Kakuta, Y, Kamachi, R, Yao, M, Tanaka, I, Kimura, M. | 登録日 | 2004-07-09 | 公開日 | 2005-03-15 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects Nat.Struct.Mol.Biol., 12, 2005
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6LZH
| Crystal structure of Alpha/beta hydrolase GrgF from Penicillium sp. sh18 | 分子名称: | GrgF, SODIUM ION | 著者 | Wang, H, Yu, J, Wang, W.G, Matsuda, Y, Yao, M. | 登録日 | 2020-02-19 | 公開日 | 2020-06-24 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Molecular Basis for the Biosynthesis of an Unusual Chain-Fused Polyketide, Gregatin A. J.Am.Chem.Soc., 142, 2020
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2ZM5
| Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | 分子名称: | MAGNESIUM ION, tRNA delta(2)-isopentenylpyrophosphate transferase, tRNA(Phe) | 著者 | Sakai, J, Yao, M, Chimnaronk, S, Tanaka, I. | 登録日 | 2008-04-11 | 公開日 | 2009-04-14 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (2.55 Å) | 主引用文献 | Snapshots of dynamics in synthesizing N(6)-isopentenyladenosine at the tRNA anticodon Biochemistry, 48, 2009
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1V7O
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1UMJ
| Crystal structure of Pyrococcus horikoshii CutA in the presence of 3M guanidine hydrochloride | 分子名称: | GUANIDINE, periplasmic divalent cation tolerance protein CutA | 著者 | Tanaka, Y, Tsumoto, K, Yasutake, Y, Sakai, N, Yao, M, Tanaka, I, Kumagai, I. | 登録日 | 2003-10-02 | 公開日 | 2004-10-05 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Structural evidence for guanidine-protein side chain interactions: crystal structure of CutA from Pyrococcus horikoshii in 3M guanidine hydrochloride Biochem.Biophys.Res.Commun., 323, 2004
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1VBF
| Crystal structure of protein L-isoaspartate O-methyltransferase homologue from Sulfolobus tokodaii | 分子名称: | 231aa long hypothetical protein-L-isoaspartate O-methyltransferase | 著者 | Tanaka, Y, Tsumoto, K, Yasutake, Y, Umetsu, M, Yao, M, Tanaka, I, Fukada, H, Kumagai, I. | 登録日 | 2004-02-25 | 公開日 | 2004-08-10 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | How Oligomerization Contributes to the Thermostability of an Archaeon Protein: PROTEIN L-ISOASPARTYL-O-METHYLTRANSFERASE FROM SULFOLOBUS TOKODAII J.Biol.Chem., 279, 2004
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1WNU
| Structure of Archaeal Trans-Editing Protein AlaX in complex with L-serine | 分子名称: | SERINE, ZINC ION, alanyl-tRNA synthetase | 著者 | Sokabe, M, Okada, A, Nakashima, T, Yao, M, Tanaka, I. | 登録日 | 2004-08-09 | 公開日 | 2005-07-26 | 最終更新日 | 2024-10-16 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Molecular basis of alanine discrimination in editing site Proc.Natl.Acad.Sci.Usa, 102, 2005
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1V55
| Bovine heart cytochrome c oxidase at the fully reduced state | 分子名称: | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ... | 著者 | Tsukihara, T, Shimokata, K, Katayama, Y, Shimada, H, Muramoto, K, Aoyama, H, Mochizuki, M, Shinzawa-Itoh, K, Yamashita, E, Yao, M, Ishimura, Y, Yoshikawa, S. | 登録日 | 2003-11-21 | 公開日 | 2003-12-23 | 最終更新日 | 2023-12-20 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process. Proc.Natl.Acad.Sci.Usa, 100, 2003
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1V54
| Bovine heart cytochrome c oxidase at the fully oxidized state | 分子名称: | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ... | 著者 | Tsukihara, T, Shimokata, K, Katayama, Y, Shimada, H, Muramoto, K, Aoyama, H, Mochizuki, M, Shinzawa-Itoh, K, Yamashita, E, Yao, M, Ishimura, Y, Yoshikawa, S. | 登録日 | 2003-11-21 | 公開日 | 2003-12-23 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process. Proc.Natl.Acad.Sci.Usa, 100, 2003
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1V4N
| Structure of 5'-deoxy-5'-methylthioadenosine phosphorylase homologue from Sulfolobus tokodaii | 分子名称: | 271aa long hypothetical 5'-methylthioadenosine phosphorylase | 著者 | Kitago, Y, Yasutake, Y, Sakai, N, Tsujimura, M, Yao, M, Watanabe, N, Kawarabayasi, Y, Tanaka, I. | 登録日 | 2003-11-14 | 公開日 | 2005-01-04 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.45 Å) | 主引用文献 | Crystal structure of Sulfolobus tokodaii MTAP To be Published
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1X0T
| Crystal structure of ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3 | 分子名称: | Ribonuclease P protein component 4, ZINC ION | 著者 | Kakuta, Y, Ishimatsu, I, Numata, T, Kimura, K, Yao, M, Tanaka, I, Kimura, M. | 登録日 | 2005-03-29 | 公開日 | 2005-11-15 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Crystal Structure of a Ribonuclease P Protein Ph1601p from Pyrococcus horikoshii OT3: An Archaeal Homologue of Human Nuclear Ribonuclease P Protein Rpp21(,) Biochemistry, 44, 2005
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1WXO
| Structure of Archaeal Trans-Editing Protein AlaX in complex with zinc | 分子名称: | ZINC ION, alanyl-tRNA synthetase | 著者 | Sokabe, M, Okada, A, Nakashima, T, Yao, M, Tanaka, I. | 登録日 | 2005-01-27 | 公開日 | 2005-07-26 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.88 Å) | 主引用文献 | Molecular basis of alanine discrimination in editing site Proc.Natl.Acad.Sci.Usa, 102, 2005
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1WZZ
| Structure of endo-beta-1,4-glucanase CMCax from Acetobacter xylinum | 分子名称: | Probable endoglucanase, SULFATE ION | 著者 | Yasutake, Y, Kawano, S, Tajima, K, Yao, M, Satoh, Y, Munekata, M, Tanaka, I, Structural Genomics Consortium (SGC) | 登録日 | 2005-03-10 | 公開日 | 2006-03-14 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | Structural characterization of the Acetobacter xylinum endo-beta-1,4-glucanase CMCax required for cellulose biosynthesis. Proteins, 64, 2006
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5XFM
| Crystal structure of beta-arabinopyranosidase | 分子名称: | Alpha-glucosidase, CALCIUM ION | 著者 | Kato, K, Okuyama, M, Yao, M. | 登録日 | 2017-04-10 | 公開日 | 2018-02-28 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | A novel glycoside hydrolase family 97 enzyme: Bifunctional beta-l-arabinopyranosidase/ alpha-galactosidase from Bacteroides thetaiotaomicron. Biochimie, 142, 2017
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2ZOY
| The multi-drug binding transcriptional repressor CgmR (CGL2612 protein) from C.glutamicum | 分子名称: | GLYCEROL, Transcriptional regulator | 著者 | Itou, H, Yao, M, Watanabe, N, Tanaka, I. | 登録日 | 2008-06-20 | 公開日 | 2008-07-08 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | The CGL2612 protein from Corynebacterium glutamicum is a drug resistance-related transcriptional repressor: structural and functional analysis of a newly identified transcription factor from genomic DNA analysis J.Biol.Chem., 280, 2005
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7F82
| Structure of the bacterial cellulose synthase subunit Z in complex with cellooligosaccharides from Enterobacter sp. CJF-002 | 分子名称: | Glucanase, S,R MESO-TARTARIC ACID, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, ... | 著者 | Fujiwara, T, Fujishima, A, Yao, M. | 登録日 | 2021-06-30 | 公開日 | 2022-02-09 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | Structural snapshot of a glycoside hydrolase family 8 endo-beta-1,4-glucanase capturing the state after cleavage of the scissile bond. Acta Crystallogr.,Sect.D, 78, 2022
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7F81
| Structure of the bacterial cellulose synthase subunit Z from Enterobacter sp. CJF-002 | 分子名称: | GLYCEROL, Glucanase, S,R MESO-TARTARIC ACID | 著者 | Fujiwara, T, Fujishima, A, Yao, M. | 登録日 | 2021-06-30 | 公開日 | 2022-02-09 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.93 Å) | 主引用文献 | Structural snapshot of a glycoside hydrolase family 8 endo-beta-1,4-glucanase capturing the state after cleavage of the scissile bond. Acta Crystallogr.,Sect.D, 78, 2022
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7F3A
| Arabidopsis thaliana GH1 beta-glucosidase AtBGlu42 | 分子名称: | Beta-glucosidase 42, GLYCEROL | 著者 | Horikoshi, S, Saburi, W, Yu, J, Yao, M. | 登録日 | 2021-06-16 | 公開日 | 2022-03-16 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Substrate specificity of glycoside hydrolase family 1 beta-glucosidase AtBGlu42 from Arabidopsis thaliana and its molecular mechanism. Biosci.Biotechnol.Biochem., 86, 2022
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2ZZF
| Crystal structure of alanyl-tRNA synthetase without oligomerization domain | 分子名称: | Alanyl-tRNA synthetase, ZINC ION | 著者 | Sokabe, M, Ose, T, Tokunaga, K, Nakamura, A, Nureki, O, Yao, M, Tanaka, I. | 登録日 | 2009-02-10 | 公開日 | 2009-07-21 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | The structure of alanyl-tRNA synthetase with editing domain. Proc.Natl.Acad.Sci.USA, 106, 2009
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2ZZG
| Crystal structure of alanyl-tRNA synthetase in complex with 5''-O-(N-(L-alanyl)-sulfamyoxyl) adenine without oligomerization domain | 分子名称: | '5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE, Alanyl-tRNA synthetase, ZINC ION | 著者 | Sokabe, M, Ose, T, Tokunaga, K, Nakamura, A, Nureki, O, Yao, M, Tanaka, I. | 登録日 | 2009-02-10 | 公開日 | 2009-07-21 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | The structure of alanyl-tRNA synthetase with editing domain. Proc.Natl.Acad.Sci.USA, 106, 2009
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2ZZE
| Crystal structure of alanyl-tRNA synthetase without oligomerization domain in lysine-methylated form | 分子名称: | Alanyl-tRNA synthetase, ZINC ION | 著者 | Sokabe, M, Ose, T, Tokunaga, K, Nakamura, A, Nureki, O, Yao, M, Tanaka, I. | 登録日 | 2009-02-10 | 公開日 | 2009-07-21 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.16 Å) | 主引用文献 | The structure of alanyl-tRNA synthetase with editing domain. Proc.Natl.Acad.Sci.USA, 106, 2009
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5Z3D
| Glycosidase F290Y | 分子名称: | CITRIC ACID, GLYCEROL, Glycoside hydrolase 15-related protein | 著者 | Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A. | 登録日 | 2018-01-05 | 公開日 | 2019-05-15 | 最終更新日 | 2024-10-16 | 実験手法 | X-RAY DIFFRACTION (1.25 Å) | 主引用文献 | Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J., 289, 2022
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