Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8CJU
DownloadVisualize
BU of 8cju by Molmil
PBP AccA from A. vitis S4 in complex with agrocin84
分子名称: ABC transporter substrate binding protein (Agrocinopine), [(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]oxy-N-[9-[(2R,3S,5R)-5-[[[(2R,3S)-4-methyl-2,3-bis(oxidanyl)pentanoyl]amino]-oxidanyl-phosphoryl]oxy-3-oxidanyl-oxolan-2-yl]purin-6-yl]phosphonamidic acid
著者Morera, S, Vigouroux, A.
登録日2023-02-13
公開日2024-01-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.349 Å)
主引用文献A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Biochem.J., 481, 2024
8CH2
DownloadVisualize
BU of 8ch2 by Molmil
PBP AccA from A. vitis S4 in complex with L-arabinose-2-phosphate (A2P)
分子名称: 1,2-ETHANEDIOL, 2-O-phosphono-alpha-L-arabinopyranose, 2-O-phosphono-beta-L-arabinopyranose, ...
著者Morera, S, Deicsics, G, Vigouroux, A.
登録日2023-02-06
公開日2024-01-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.404 Å)
主引用文献A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Biochem.J., 481, 2024
8C6W
DownloadVisualize
BU of 8c6w by Molmil
PBP AccA from A. tumefaciens Bo542 in apoform 1
分子名称: Agrocinopine utilization periplasmic binding protein AccA
著者Morera, S, Vigouroux, A, Legrand, P.
登録日2023-01-12
公開日2024-01-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Biochem.J., 481, 2024
8C6R
DownloadVisualize
BU of 8c6r by Molmil
PBP AccA from A. tumefaciens Bo542 in apoform 4
分子名称: 1,2-ETHANEDIOL, Agrocinopine utilization periplasmic binding protein AccA, DI(HYDROXYETHYL)ETHER, ...
著者Morera, S, Vigouroux, A.
登録日2023-01-12
公開日2024-01-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.884 Å)
主引用文献A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Biochem.J., 481, 2024
8CH1
DownloadVisualize
BU of 8ch1 by Molmil
PBP AccA from A. vitis S4 in complex with Agrocinopine A
分子名称: 1,2-ETHANEDIOL, 2-O-phosphono-alpha-L-arabinopyranose, 2-O-phosphono-beta-L-arabinopyranose, ...
著者Morera, S, Vigouroux, A.
登録日2023-02-06
公開日2024-01-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.496 Å)
主引用文献A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Biochem.J., 481, 2024
8CKD
DownloadVisualize
BU of 8ckd by Molmil
PBP AccA from A. fabrum C58 in complex with agrocinopine D-like
分子名称: 1,2-ETHANEDIOL, ABC transporter substrate-binding protein, Agrocinopine D-like (C2-C2 linked; with an alpha and beta-D-glucopyranose), ...
著者Morera, S, Vigouroux, A.
登録日2023-02-15
公開日2024-01-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Biochem.J., 481, 2024
8CHC
DownloadVisualize
BU of 8chc by Molmil
PBP AccA from A. vitis S4 in complex with Agrocinopine D-like
分子名称: Agrocinopine D-like (C2-C2 linked; with two alpha-D-glucopyranoses), Agrocinopine utilization periplasmic binding protein AccA
著者Morera, S, Vigouroux, A, Deicsics, G.
登録日2023-02-07
公開日2024-01-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.679 Å)
主引用文献A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Biochem.J., 481, 2024
8CKO
DownloadVisualize
BU of 8cko by Molmil
PBP AccA from A.tumefaciens C58 in complex with agrocinopine C-like
分子名称: 2-O-phosphono-alpha-D-glucopyranose, 2-O-phosphono-beta-D-glucopyranose, ABC transporter substrate-binding protein, ...
著者Morera, S, Vigouroux, A.
登録日2023-02-16
公開日2024-01-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.421 Å)
主引用文献A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Biochem.J., 481, 2024
8CKE
DownloadVisualize
BU of 8cke by Molmil
PBP AccA from A.tumefaciens C58 in complex with agrocinopine A in space group I222
分子名称: 1,2-ETHANEDIOL, 2-O-phosphono-alpha-L-arabinopyranose, 2-O-phosphono-beta-L-arabinopyranose, ...
著者Morera, S, Vigouroux, A.
登録日2023-02-15
公開日2024-01-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.298 Å)
主引用文献A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Biochem.J., 481, 2024
5OT8
DownloadVisualize
BU of 5ot8 by Molmil
Structure of the periplasmic binding protein (PBP) NocT-G97S mutant from A. tumefaciens C58 in complex with octopine.
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Vigouroux, A, Morera, S.
登録日2017-08-21
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OVZ
DownloadVisualize
BU of 5ovz by Molmil
High resolution structure of the PBP NocT in complex with nopaline
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, N-[(1S)-4-carbamimidamido-1-carboxybutyl]-D-glutamic acid, ...
著者Vigouroux, A, Morera, S.
登録日2017-08-30
公開日2018-10-10
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
5ORG
DownloadVisualize
BU of 5org by Molmil
Structure of the periplasmic binding protein (PBP) OccJ from A. tumefaciens B6 in complex with octopine.
分子名称: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
著者Vigouroux, A, Morera, S.
登録日2017-08-16
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OTA
DownloadVisualize
BU of 5ota by Molmil
Structure of the periplasmic binding protein (PBP) NocT from Agrobacterium tumefaciens C58 in complex with octopinic acid
分子名称: (2~{S})-5-azanyl-2-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]pentanoic acid, 1,2-ETHANEDIOL, Nopaline-binding periplasmic protein
著者Vigouroux, A, Morera, S.
登録日2017-08-21
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OT9
DownloadVisualize
BU of 5ot9 by Molmil
Structure of the periplasmic binding protein (PBP) NocT from A.tumefaciens C58 in complex with histopine.
分子名称: 1,2-ETHANEDIOL, Histopine, Nopaline-binding periplasmic protein
著者Vigouroux, A, Morera, S.
登録日2017-08-21
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5ORE
DownloadVisualize
BU of 5ore by Molmil
Structure of the periplasmic binding protein (PBP) OccJ from agrobacterium tumefaciens B6
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Octopine-binding periplasmic protein
著者Vigouroux, A, Morera, S.
登録日2017-08-16
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
7C31
DownloadVisualize
BU of 7c31 by Molmil
Crystal structure of the grapevine defensin VvK1
分子名称: Knot1 domain-containing protein
著者Chen, M.W, Chang, S.C, Chandy, K.G, Luo, D.
登録日2020-05-10
公開日2020-09-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Modulation of Lymphocyte Potassium Channel KV1.3 by Membrane-Penetrating, Joint-Targeting Immunomodulatory Plant Defensin.
Acs Pharmacol Transl Sci, 3, 2020
5OTC
DownloadVisualize
BU of 5otc by Molmil
Structure of the periplasmic binding protein (PBP) NocT from Agrobacterium tumefaciens C58 in complex with noroctopinic acid.
分子名称: (2~{S})-5-azanyl-2-(2-hydroxy-2-oxoethylamino)pentanoic acid, 1,2-ETHANEDIOL, CHLORIDE ION, ...
著者Vigouroux, A, Morera, S.
登録日2017-08-21
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
<1234

 

224931

件を2024-09-11に公開中

PDB statisticsPDBj update infoContact PDBjnumon