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1UEK
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Crystal structure of 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase
分子名称: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase
著者Wada, T, Kuramitsu, S, Yokoyama, S, Tame, J.R.H, Park, S.Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-05-17
公開日2003-06-17
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, an Enzyme in the Non-mevalonate Pathway of Isoprenoid Synthesis.
J.Biol.Chem., 278, 2003
3VUS
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BU of 3vus by Molmil
Escherichia coli PgaB N-terminal domain
分子名称: ACETATE ION, MERCURY (II) ION, Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase, ...
著者Nishiyama, T, Noguchi, H, Yoshida, H, Park, S.-Y, Tame, J.R.H.
登録日2012-07-05
公開日2012-11-14
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献The structure of the deacetylase domain of Escherichia coli PgaB, an enzyme required for biofilm formation: a circularly permuted member of the carbohydrate esterase 4 family
Acta Crystallogr.,Sect.D, 69, 2013
1B3H
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BU of 1b3h by Molmil
OLIGO-PEPTIDE BINDING PROTEIN COMPLEXED WITH LYSYL-CYCLOHEXYLALANYL-LYSINE
分子名称: LYS-ALC-LYS PEPTIDE, PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN, URANIUM ATOM
著者Davies, T.G, Tame, J.R.H.
登録日1998-11-16
公開日1998-11-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Relating structure to thermodynamics: the crystal structures and binding affinity of eight OppA-peptide complexes.
Protein Sci., 8, 1999
1B2H
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Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine
分子名称: ACETATE ION, LYS-ORN-LYS, PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN, ...
著者Davies, T.G, Tame, J.R.H.
登録日1998-11-16
公開日1998-11-16
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Relating structure to thermodynamics: the crystal structures and binding affinity of eight OppA-peptide complexes.
Protein Sci., 8, 1999
1B1H
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OLIGO-PEPTIDE BINDING PROTEIN/TRIPEPTIDE (LYS HPE LYS) COMPLEX
分子名称: PROTEIN (LYS HPE LYS), PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN), URANYL (VI) ION
著者Davies, T.G, Tame, J.R.H.
登録日1998-11-10
公開日1998-11-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Relating structure to thermodynamics: the crystal structures and binding affinity of eight OppA-peptide complexes.
Protein Sci., 8, 1999
1B5H
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BU of 1b5h by Molmil
OLIGO-PEPTIDE BINDING PROTEIN COMPLEXED WITH LYSYL-DIAMINOPROPANOIC ACID-LYSINE
分子名称: LYS-DPP-LYS PEPTIDE, OLIGO-PEPTIDE BINDING PROTEIN, URANIUM ATOM
著者Davies, T.G, Tame, J.R.H.
登録日1998-11-13
公開日1998-11-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Relating structure to thermodynamics: the crystal structures and binding affinity of eight OppA-peptide complexes.
Protein Sci., 8, 1999
1B4H
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OLIGO-PEPTIDE BINDING PROTEIN COMPLEXED WITH LYSYL-DIAMINOBUTYRIC ACID-LYSINE
分子名称: LYS-DAB-LYS PEPTIDE, PERIPLASMIC OLIGO-PEPTIDE BINDING PROTEIN, URANIUM ATOM
著者Davies, T.G, Tame, J.R.H.
登録日1998-11-11
公開日1998-11-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Relating structure to thermodynamics: the crystal structures and binding affinity of eight OppA-peptide complexes.
Protein Sci., 8, 1999
1B6H
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OLIGO-PEPTIDE BINDING PROTEIN COMPLEXED WITH LYSYL-NORVALYL-LYSINE
分子名称: LYS-NVA-LYS PEPTIDE, Periplasmic oligopeptide-binding protein, URANIUM ATOM
著者Davies, T.G, Tame, J.R.H.
登録日1998-11-13
公開日1998-11-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Relating structure to thermodynamics: the crystal structures and binding affinity of eight OppA-peptide complexes.
Protein Sci., 8, 1999
3X1Y
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BU of 3x1y by Molmil
Ras-related protein Rap1B(L9V) with GppNHp
分子名称: CADMIUM ION, GLYCEROL, MAGNESIUM ION, ...
著者Noguchi, H, Ikegami, T, Park, S.Y, Tame, J.R.H, Unzai, S.
登録日2014-12-02
公開日2015-06-03
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.168 Å)
主引用文献The structure and conformational switching of Rap1B
Biochem.Biophys.Res.Commun., 462, 2015
3X1W
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Ras-related protein Rap1B with GDP
分子名称: CADMIUM ION, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Noguchi, H, Ikegami, T, Akashi, S, Park, S.Y, Tame, J.R.H, Unzai, S.
登録日2014-12-02
公開日2015-06-03
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献The structure and conformational switching of Rap1B
Biochem.Biophys.Res.Commun., 462, 2015
3X1X
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Ras-related protein Rap1B with GppNHp
分子名称: CADMIUM ION, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
著者Noguchi, H, Ikegami, T, Park, S.Y, Tame, J.R.H, Unzai, S.
登録日2014-12-02
公開日2015-06-03
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献The structure and conformational switching of Rap1B
Biochem.Biophys.Res.Commun., 462, 2015
3X1Z
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BU of 3x1z by Molmil
Ras-related protein Rap1B(T65A) with GppNHp
分子名称: GLYCEROL, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
著者Noguchi, H, Ikegami, T, Park, S.Y, Tame, J.R.H, Unzai, S.
登録日2014-12-02
公開日2015-06-03
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献The structure and conformational switching of Rap1B
Biochem.Biophys.Res.Commun., 462, 2015
1B7H
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OLIGO-PEPTIDE BINDING PROTEIN COMPLEXED WITH LYSYL-NORLEUCYL-LYSINE
分子名称: LYS-NLE-LYS PEPTIDE, Periplasmic oligopeptide-binding protein, URANIUM ATOM
著者Davies, T.G, Tame, J.R.H.
登録日1998-11-16
公開日1998-11-25
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Relating structure to thermodynamics: the crystal structures and binding affinity of eight OppA-peptide complexes.
Protein Sci., 8, 1999
1IV4
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BU of 1iv4 by Molmil
Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form Substrate)
分子名称: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, CYTIDINE-5'-MONOPHOSPHATE, MAGNESIUM ION
著者Kishida, H, Wada, T, Unzai, S, Kuzuyama, T, Terada, T, Sirouzu, M, Yokoyama, S, Tame, J.R.H, Park, S.-Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-03-11
公開日2002-09-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis.
Acta Crystallogr.,Sect.D, 59, 2003
1IV1
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Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase
分子名称: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
著者Kishida, H, Wada, T, Unzai, S, Kuzuyama, T, Terada, T, Sirouzu, M, Yokoyama, S, Tame, J.R.H, Park, S.-Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-03-11
公開日2002-09-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis.
Acta Crystallogr.,Sect.D, 59, 2003
1IV2
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Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form CDP)
分子名称: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION
著者Kishida, H, Wada, T, Unzai, S, Kuzuyama, T, Terada, T, Sirouzu, M, Yokoyama, S, Tame, J.R.H, Park, S.-Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-03-11
公開日2002-09-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis.
Acta Crystallogr.,Sect.D, 59, 2003
1IV3
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Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form MG atoms)
分子名称: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, MAGNESIUM ION
著者Kishida, H, Wada, T, Unzai, S, Kuzuyama, T, Terada, T, Sirouzu, M, Yokoyama, S, Tame, J.R.H, Park, S.-Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-03-11
公開日2002-09-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis.
Acta Crystallogr.,Sect.D, 59, 2003
1J3M
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BU of 1j3m by Molmil
Crystal structure of the conserved hypothetical protein TT1751 from Thermus thermophilus HB8
分子名称: SULFITE ION, the conserved hypothetical protein TT1751
著者Kishishita, S, Terada, T, Shirouzu, M, Kuramitsu, S, Park, S.-Y, Tame, R.H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-02-05
公開日2004-05-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8
Proteins, 57, 2004
1UDX
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Crystal structure of the conserved protein TT1381 from Thermus thermophilus HB8
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, the GTP-binding protein Obg
著者Kukimoto-Niino, M, Shirouzu, M, Murayama, K, Inoue, M, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-05-07
公開日2004-03-16
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Crystal structure of the GTP-binding protein Obg from Thermus thermophilus HB8.
J.Mol.Biol., 337, 2004
3HPE
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Crystal structure of yceI (HP1286) from Helicobacter pylori
分子名称: (13Z)-docos-13-enamide, Conserved hypothetical secreted protein
著者Sisinni, L, Cendron, L, Zanotti, G.
登録日2009-06-04
公開日2010-04-14
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Helicobacter pylori acidic stress response factor HP1286 is a YceI homolog with new binding specificity.
Febs J., 277, 2010
1B0H
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BU of 1b0h by Molmil
OLIGO-PEPTIDE BINDING PROTEIN COMPLEXED WITH LYSYL-NAPTHYLALANYL-LYSINE
分子名称: LYS-ALN-LYS PEPTIDE, PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN, URANIUM ATOM
著者Davies, T.G, Tame, J.R.H.
登録日1998-11-10
公開日1998-11-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Relating structure to thermodynamics: the crystal structures and binding affinity of eight OppA-peptide complexes.
Protein Sci., 8, 1999
1V4W
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Crystal structure of bluefin tuna hemoglobin deoxy form at pH7.5
分子名称: PROTOPORPHYRIN IX CONTAINING FE, hemoglobin alpha chain, hemoglobin beta chain
著者Yokoyama, T, Chong, K.T, Miyazaki, Y, Nakatsukasa, T, Unzai, S, Miyazaki, G, Morimoto, H, Jeremy, R.H.T, Park, S.Y.
登録日2003-11-19
公開日2004-07-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Novel Mechanisms of pH Sensitivity in Tuna Hemoglobin: A STRUCTURAL EXPLANATION OF THE ROOT EFFECT
J.Biol.Chem., 279, 2004
1V4U
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Crystal structure of bluefin tuna carbonmonoxy-hemoglobin
分子名称: CARBON MONOXIDE, PROTOPORPHYRIN IX CONTAINING FE, hemoglobin alpha chain, ...
著者Yokoyama, T, Chong, K.T, Miyazaki, Y, Nakatsukasa, T, Unzai, S, Miyazaki, G, Morimoto, H, Jeremy, R.H.T, Park, S.Y.
登録日2003-11-19
公開日2004-07-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Novel Mechanisms of pH Sensitivity in Tuna Hemoglobin: A STRUCTURAL EXPLANATION OF THE ROOT EFFECT
J.Biol.Chem., 279, 2004
1V4X
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Crystal structure of bluefin tuna hemoglobin deoxy form at pH5.0
分子名称: PROTOPORPHYRIN IX CONTAINING FE, hemoglobin alpha chain, hemoglobin beta chain
著者Yokoyama, T, Chong, K.T, Miyazaki, Y, Nakatsukasa, T, Unzai, S, Miyazaki, G, Morimoto, H, Jeremy, R.H.T, Park, S.Y.
登録日2003-11-19
公開日2004-07-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Novel Mechanisms of pH Sensitivity in Tuna Hemoglobin: A STRUCTURAL EXPLANATION OF THE ROOT EFFECT
J.Biol.Chem., 279, 2004
3V7A
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Structural basis for broad detection of genogroup II noroviruses by a monoclonal antibody that binds to a site occluded in the viral particle
分子名称: 5B18 heavy chain, 5B18 kappa chain, Capsid
著者Hansman, G.S, Mclellan, J.S, Kwong, P.D.
登録日2011-12-20
公開日2012-02-08
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.297 Å)
主引用文献Structural Basis for Broad Detection of Genogroup II Noroviruses by a Monoclonal Antibody That Binds to a Site Occluded in the Viral Particle.
J.Virol., 86, 2012

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