4Y7P
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![BU of 4y7p by Molmil](/molmil-images/mine/4y7p) | Structure of alkaline D-peptidase from Bacillus cereus | 分子名称: | Alkaline D-peptidase, THIOCYANATE ION | 著者 | Nakano, S, Okazaki, S, Ishitsubo, E, Kawahara, N, Komeda, H, Tokiwa, H, Asano, Y. | 登録日 | 2015-02-15 | 公開日 | 2015-10-14 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Structural and computational analysis of peptide recognition mechanism of class-C type penicillin binding protein, alkaline D-peptidase from Bacillus cereus DF4-B Sci Rep, 5, 2015
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4YK7
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7VB6
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![BU of 7vb6 by Molmil](/molmil-images/mine/7vb6) | Crystal structure of hydroxynitrile lyase from Linum usitatissium complexed with (R)-2-hydroxy-2-methylbutanenitrile | 分子名称: | (2R)-2-methyl-2-oxidanyl-butanenitrile, 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... | 著者 | Zheng, D, Nakabayashi, M, Asano, Y. | 登録日 | 2021-08-30 | 公開日 | 2022-02-09 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.74 Å) | 主引用文献 | Structural characterization of Linum usitatissimum hydroxynitrile lyase: A new cyanohydrin decomposition mechanism involving a cyano-zinc complex. J.Biol.Chem., 298, 2022
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7VB3
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![BU of 7vb3 by Molmil](/molmil-images/mine/7vb3) | Crystal structure of hydroxynitrile lyase from Linum usitatissimum | 分子名称: | 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Aliphatic (R)-hydroxynitrile lyase, ... | 著者 | Zheng, D, Nakabayashi, M, Asano, Y. | 登録日 | 2021-08-30 | 公開日 | 2022-02-09 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.48 Å) | 主引用文献 | Structural characterization of Linum usitatissimum hydroxynitrile lyase: A new cyanohydrin decomposition mechanism involving a cyano-zinc complex. J.Biol.Chem., 298, 2022
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7VB5
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![BU of 7vb5 by Molmil](/molmil-images/mine/7vb5) | Crystal structure of hydroxynitrile lyase from Linum usitatissimum complexed with acetone cyanohydrin | 分子名称: | 1,2-ETHANEDIOL, 2-HYDROXY-2-METHYLPROPANENITRILE, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... | 著者 | Zheng, D, Nakabayashi, M, Asano, Y. | 登録日 | 2021-08-30 | 公開日 | 2022-02-09 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.58 Å) | 主引用文献 | Structural characterization of Linum usitatissimum hydroxynitrile lyase: A new cyanohydrin decomposition mechanism involving a cyano-zinc complex. J.Biol.Chem., 298, 2022
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2EFX
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![BU of 2efx by Molmil](/molmil-images/mine/2efx) | The crystal structure of D-amino acid amidase from Ochrobactrum anthropi SV3 complexed with L-phenylalanine amide | 分子名称: | BARIUM ION, D-amino acid amidase, PHENYLALANINE AMIDE | 著者 | Okazaki, S, Suzuki, A, Mizushima, T, Komeda, H, Asano, Y, Yamane, T. | 登録日 | 2007-02-26 | 公開日 | 2007-03-06 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structures of D-amino-acid amidase complexed with L-phenylalanine and with L-phenylalanine amide: insight into the D-stereospecificity of D-amino-acid amidase from Ochrobactrum anthropi SV3. Acta Crystallogr.,Sect.D, 64, 2008
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2EFU
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![BU of 2efu by Molmil](/molmil-images/mine/2efu) | The crystal structure of D-amino acid amidase from Ochrobactrum anthropi SV3 complexed with L-phenylalanine | 分子名称: | BARIUM ION, D-Amino acid amidase, PHENYLALANINE | 著者 | Okazaki, S, Suzuki, A, Mizushima, T, Komeda, H, Asano, Y, Yamane, T. | 登録日 | 2007-02-26 | 公開日 | 2007-03-06 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structures of D-amino-acid amidase complexed with L-phenylalanine and with L-phenylalanine amide: insight into the D-stereospecificity of D-amino-acid amidase from Ochrobactrum anthropi SV3. Acta Crystallogr.,Sect.D, 64, 2008
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2DRW
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![BU of 2drw by Molmil](/molmil-images/mine/2drw) | The crystal structutre of D-amino acid amidase from Ochrobactrum anthropi SV3 | 分子名称: | BARIUM ION, D-Amino acid amidase | 著者 | Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T. | 登録日 | 2006-06-15 | 公開日 | 2006-07-04 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Crystal Structure and Functional Characterization of a D-Stereospecific Amino Acid Amidase from Ochrobactrum anthropi SV3, a New Member of the Penicillin-recognizing Proteins J.Mol.Biol., 368, 2007
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2DNS
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![BU of 2dns by Molmil](/molmil-images/mine/2dns) | The crystal structure of D-amino acid amidase from Ochrobactrum anthropi SV3 complexed with D-Phenylalanine | 分子名称: | BARIUM ION, D-PHENYLALANINE, D-amino acid amidase | 著者 | Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T. | 登録日 | 2006-04-26 | 公開日 | 2006-05-09 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Crystal Structure and Functional Characterization of a D-Stereospecific Amino Acid Amidase from Ochrobactrum anthropi SV3, a New Member of the Penicillin-recognizing Proteins J.Mol.Biol., 368, 2007
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7YCF
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![BU of 7ycf by Molmil](/molmil-images/mine/7ycf) | HYDROXYNITRILE LYASE FROM THE MILLIPEDE, Oxidus gracilis IN ACETONITRILE | 分子名称: | 2-HYDROXY-2-METHYLPROPANENITRILE, CHLORIDE ION, Hydroxynitrile lyase, ... | 著者 | Chaikaew, S, Watanabe, Y, Zheng, D, Motojima, F, Asano, Y. | 登録日 | 2022-07-01 | 公開日 | 2024-01-24 | 最終更新日 | 2024-06-19 | 実験手法 | X-RAY DIFFRACTION (2.01 Å) | 主引用文献 | Structure-Based Site-Directed Mutagenesis of Hydroxynitrile Lyase from Cyanogenic Millipede, Oxidus gracilis for Hydrocyanation and Henry Reactions. Chembiochem, 25, 2024
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7YCB
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![BU of 7ycb by Molmil](/molmil-images/mine/7ycb) | HYDROXYNITRILE LYASE FROM THE MILLIPEDE | 分子名称: | CHLORIDE ION, GLYCEROL, Hydroxynitrile lyase, ... | 著者 | Chaikaew, S, Watanabe, Y, Zheng, D, Motojima, F, Asano, Y. | 登録日 | 2022-07-01 | 公開日 | 2024-01-24 | 最終更新日 | 2024-06-19 | 実験手法 | X-RAY DIFFRACTION (2.01 Å) | 主引用文献 | Structure-Based Site-Directed Mutagenesis of Hydroxynitrile Lyase from Cyanogenic Millipede, Oxidus gracilis for Hydrocyanation and Henry Reactions. Chembiochem, 25, 2024
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7YCT
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![BU of 7yct by Molmil](/molmil-images/mine/7yct) | HYDROXYNITRILE LYASE FROM THE MILLIPEDE, Oxidus gracilis complexed with (R)-2-Chloromandelonitrile | 分子名称: | (2~{R})-2-(2-chlorophenyl)-2-oxidanyl-ethanenitrile, GLYCEROL, Hydroxynitrile lyase, ... | 著者 | Chaikaew, S, Watanabe, Y, Zheng, D, Motojima, F, Asano, Y. | 登録日 | 2022-07-01 | 公開日 | 2024-01-24 | 最終更新日 | 2024-06-19 | 実験手法 | X-RAY DIFFRACTION (2.01 Å) | 主引用文献 | Structure-Based Site-Directed Mutagenesis of Hydroxynitrile Lyase from Cyanogenic Millipede, Oxidus gracilis for Hydrocyanation and Henry Reactions. Chembiochem, 25, 2024
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7YCD
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![BU of 7ycd by Molmil](/molmil-images/mine/7ycd) | HYDROXYNITRILE LYASE FROM THE MILLIPEDE, Oxidus gracilis bound with (R)-(+)-ALPHA-HYDROXYBENZENE-ACETONITRILE | 分子名称: | (2R)-hydroxy(phenyl)ethanenitrile, Hydroxynitrile lyase, SULFATE ION | 著者 | Chaikaew, S, Watanabe, Y, Zheng, D, Motojima, F, Asano, Y. | 登録日 | 2022-07-01 | 公開日 | 2024-01-24 | 最終更新日 | 2024-06-19 | 実験手法 | X-RAY DIFFRACTION (2.01 Å) | 主引用文献 | Structure-Based Site-Directed Mutagenesis of Hydroxynitrile Lyase from Cyanogenic Millipede, Oxidus gracilis for Hydrocyanation and Henry Reactions. Chembiochem, 25, 2024
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7YAX
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![BU of 7yax by Molmil](/molmil-images/mine/7yax) | HYDROXYNITRILE LYASE FROM THE MILLIPEDE, | 分子名称: | CHLORIDE ION, Hydroxynitrile lyase, SULFATE ION | 著者 | Chaikaew, S, Watanabe, Y, Zheng, D, Motojima, F, Asano, Y. | 登録日 | 2022-06-28 | 公開日 | 2024-01-17 | 最終更新日 | 2024-06-19 | 実験手法 | X-RAY DIFFRACTION (2.01 Å) | 主引用文献 | Structure-Based Site-Directed Mutagenesis of Hydroxynitrile Lyase from Cyanogenic Millipede, Oxidus gracilis for Hydrocyanation and Henry Reactions. Chembiochem, 25, 2024
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7YPD
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2ZUK
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![BU of 2zuk by Molmil](/molmil-images/mine/2zuk) | The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae complexed with epsilon caprolactam (different binding mode) | 分子名称: | Alpha-amino-epsilon-caprolactam racemase, PYRIDOXAL-5'-PHOSPHATE, azepan-2-one | 著者 | Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T. | 登録日 | 2008-10-18 | 公開日 | 2009-02-17 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.41 Å) | 主引用文献 | The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae Biochemistry, 48, 2009
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3WEV
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![BU of 3wev by Molmil](/molmil-images/mine/3wev) | Crystal structure of the Schiff base intermediate of L-Lys epsilon-oxidase from Marinomonas mediterranea with L-Lys | 分子名称: | 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, L-lysine 6-oxidase, ... | 著者 | Okazaki, S, Nakano, S, Matsui, D, Akaji, S, Inagaki, K, Asano, Y. | 登録日 | 2013-07-12 | 公開日 | 2013-09-04 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.98 Å) | 主引用文献 | X-Ray crystallographic evidence for the presence of the cysteine tryptophylquinone cofactor in L-lysine {varepsilon}-oxidase from Marinomonas mediterranea J.Biochem., 154, 2013
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3WGT
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![BU of 3wgt by Molmil](/molmil-images/mine/3wgt) | Crystal structure of D-amino acid oxidase mutant | 分子名称: | (1R)-1-phenylethanamine, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, ... | 著者 | Yasukawa, K, Nakano, S, Asano, Y. | 登録日 | 2013-08-09 | 公開日 | 2014-04-02 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.88 Å) | 主引用文献 | Tailoring D-amino acid oxidase from the pig kidney to R-stereoselective amine oxidase and its use in the deracemization of alpha-methylbenzylamine. Angew.Chem.Int.Ed.Engl., 53, 2014
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3WMW
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![BU of 3wmw by Molmil](/molmil-images/mine/3wmw) | GalE-like L-Threonine dehydrogenase from Cupriavidus necator (apo form) | 分子名称: | CALCIUM ION, NAD dependent epimerase/dehydratase | 著者 | Nakano, S, Okazaki, S, Tokiwa, H, Asano, Y. | 登録日 | 2013-11-29 | 公開日 | 2014-02-26 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | Binding of NAD+ and L-Threonine Induces Stepwise Structural and Flexibility Changes in Cupriavidus necator L-Threonine Dehydrogenase J.Biol.Chem., 289, 2014
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3WWO
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![BU of 3wwo by Molmil](/molmil-images/mine/3wwo) | S-selective hydroxynitrile lyase from Baliospermum montanum (apo1) | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, (S)-hydroxynitrile lyase, CALCIUM ION | 著者 | Nakano, S, Dadashipour, M, Asano, Y. | 登録日 | 2014-06-23 | 公開日 | 2014-10-22 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.55 Å) | 主引用文献 | Structural and functional analysis of hydroxynitrile lyase from Baliospermum montanum with crystal structure, molecular dynamics and enzyme kinetics Biochim.Biophys.Acta, 1844, 2014
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6KFD
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![BU of 6kfd by Molmil](/molmil-images/mine/6kfd) | Hydroxynitrile lyase from the millipede, Chamberlinius hualienensis, complexed with iodoacetate | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Hydroxynitrile lyase, iodoacetic acid | 著者 | Motojima, F, Izumi, A, Asano, Y. | 登録日 | 2019-07-07 | 公開日 | 2020-07-08 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | R-hydroxynitrile lyase from the cyanogenic millipede, Chamberlinius hualienensis-A new entry to the carrier protein family Lipocalines. Febs J., 288, 2021
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6KFC
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![BU of 6kfc by Molmil](/molmil-images/mine/6kfc) | Hydroxynitrile lyase from the millipede, Chamberlinius hualienensis, complexed with cyanide ion | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, CYANIDE ION, Hydroxynitrile lyase, ... | 著者 | Motojima, F, Izumi, A, Asano, Y. | 登録日 | 2019-07-07 | 公開日 | 2020-07-08 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | R-hydroxynitrile lyase from the cyanogenic millipede, Chamberlinius hualienensis-A new entry to the carrier protein family Lipocalines. Febs J., 288, 2021
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6KFE
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6KFA
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![BU of 6kfa by Molmil](/molmil-images/mine/6kfa) | Hydroxynitrile lyase from the millipede, Chamberlinius hualienensis bound with acetate | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Hydroxynitrile lyase | 著者 | Motojima, F, Izumi, A, Asano, Y. | 登録日 | 2019-07-07 | 公開日 | 2020-07-08 | 最終更新日 | 2021-06-23 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | R-hydroxynitrile lyase from the cyanogenic millipede, Chamberlinius hualienensis-A new entry to the carrier protein family Lipocalines. Febs J., 288, 2021
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6KFB
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![BU of 6kfb by Molmil](/molmil-images/mine/6kfb) | Hydroxynitrile lyase from the millipede, Chamberlinius hualienensis bound with thiocyanate | 分子名称: | Hydroxynitrile lyase, THIOCYANATE ION, alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | 著者 | Motojima, F, Izumi, A, Asano, Y. | 登録日 | 2019-07-07 | 公開日 | 2020-07-08 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | R-hydroxynitrile lyase from the cyanogenic millipede, Chamberlinius hualienensis-A new entry to the carrier protein family Lipocalines. Febs J., 288, 2021
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