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5XQK
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Crystal Structure of Transketolase in complex with xylulose-5-phosphate from Pichia Stipitis
分子名称: 2-C-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thia zol-3-ium-2-yl}-5-O-phosphono-D-xylitol, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Li, T.L, Hsu, N.S, Wang, Y.L.
登録日2017-06-07
公開日2018-06-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献Evidence of Diradicals Involved in the Yeast Transketolase Catalyzed Keto-Transferring Reactions.
Chembiochem, 19, 2018
5ZZS
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BU of 5zzs by Molmil
The crystal structure of Mandelate oxidase with benzoic acid
分子名称: 4-hydroxymandelate oxidase, BENZOIC ACID, FLAVIN MONONUCLEOTIDE
著者Li, T.L, Lin, K.H.
登録日2018-06-04
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.398 Å)
主引用文献Biochemical and structural explorations of alpha-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction.
Acta Crystallogr D Struct Biol, 75, 2019
5ZZY
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BU of 5zzy by Molmil
The crystal structure of Mandelate oxidase mutant Y128F with L-Lactate
分子名称: (2S)-2-HYDROXYPROPANOIC ACID, 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE
著者Li, T.L, Lin, K.H.
登録日2018-06-04
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Biochemical and structural explorations of alpha-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction.
Acta Crystallogr D Struct Biol, 75, 2019
6A01
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BU of 6a01 by Molmil
The crystal structure of Mandelate oxidase Y128F with 3,3-difluoro-2,2-dihydroxy-3-phenylpropionic acid
分子名称: 3,3-difluoro-2,2-dihydroxy-3-phenylpropanoic acid, 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE
著者Li, T.L, Lin, K.H.
登録日2018-06-05
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.868 Å)
主引用文献Structural and chemical trapping of flavin-oxide intermediates reveals substrate-directed reaction multiplicity.
Protein Sci., 29, 2020
6A0G
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BU of 6a0g by Molmil
The crystal structure of Mandelate oxidase mutant Y128F with b-Phenyllactate
分子名称: 4-hydroxymandelate oxidase, ALPHA-HYDROXY-BETA-PHENYL-PROPIONIC ACID, FLAVIN MONONUCLEOTIDE
著者Li, T.L, Lin, K.H.
登録日2018-06-05
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Biochemical and structural explorations of alpha-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction.
Acta Crystallogr D Struct Biol, 75, 2019
6A23
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BU of 6a23 by Molmil
Mandelate oxidase mutant-Y128F with the N5-benzyl-FMN adduct
分子名称: 1-[5-(benzenecarbonyl)-7,8-dimethyl-2,4-dioxo-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-1-deoxy-5-O-phosphono-D-ribitol, 4-hydroxymandelate oxidase, BENZOYL-FORMIC ACID, ...
著者Li, T.L, Lin, K.H.
登録日2018-06-08
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75, 2019
6A1A
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BU of 6a1a by Molmil
Mandelate oxidase mutant-Y128F with 4-hydroxymandelic acid
分子名称: (2S)-hydroxy(4-hydroxyphenyl)ethanoic acid, 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE
著者Li, T.L, Lin, K.H.
登録日2018-06-07
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Biochemical and structural explorations of alpha-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction.
Acta Crystallogr D Struct Biol, 75, 2019
6A1N
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BU of 6a1n by Molmil
Mandelate oxidase mutant-Y128F with (2R,3S)-3-fluoro-2-hydroxy-3-phenylpropanoic acid
分子名称: (2R,3S)-3-fluoro-2-hydroxy-3-phenylpropanoic acid, 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE, ...
著者Li, T.L, Lin, K.H.
登録日2018-06-07
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.421 Å)
主引用文献Structural and chemical trapping of flavin-oxide intermediates reveals substrate-directed reaction multiplicity.
Protein Sci., 29, 2020
6A1W
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BU of 6a1w by Molmil
Mandelate oxidase with the enoyl FMN epoxide adduct
分子名称: 1-[(1aR,11R)-11-acetyl-8,9-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]oxazireno[3,2-e]pteridin-11-ium-6(2H)-yl]-1-deoxy-5-O-phosphono-D-ribitol, 4-hydroxymandelate oxidase, MAGNESIUM ION
著者Li, T.L, Lin, K.H.
登録日2018-06-08
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural and chemical trapping of flavin-oxide intermediates reveals substrate-directed reaction multiplicity.
Protein Sci., 29, 2020
5ZZT
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BU of 5zzt by Molmil
The crystal structure of Mandelate oxidase with 3,3-difluoro-2-hydroxy-3-phenylpropionic acid
分子名称: (2R)-3,3-difluoro-2-hydroxy-3-phenylpropanoic acid, 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE
著者Li, T.L, Lin, K.H.
登録日2018-06-04
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Structural and chemical trapping of flavin-oxide intermediates reveals substrate-directed reaction multiplicity.
Protein Sci., 29, 2020
5ZZZ
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BU of 5zzz by Molmil
The crystal structure of Mandelate oxidase Y128C with benzoyl-formic acid
分子名称: 4-hydroxymandelate oxidase, BENZOYL-FORMIC ACID, FLAVIN MONONUCLEOTIDE
著者Li, T.L, Lin, K.H.
登録日2018-06-05
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.446 Å)
主引用文献The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75, 2019
6A21
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BU of 6a21 by Molmil
Mandelate oxidase mutant-Y128F with the N5-malonyl-FMN adduct
分子名称: 3-[7,8-dimethyl-2,4-bis(oxidanylidene)-10-[(2S,3S,4R)-2,3,4-tris(oxidanyl)-5-phosphonooxy-pentyl]-1H-benzo[g]pteridin-5-yl]-3-oxidanylidene-propanoic acid, 4-hydroxymandelate oxidase
著者Li, T.L, Lin, K.H.
登録日2018-06-08
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.501 Å)
主引用文献The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75, 2019
6A4H
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BU of 6a4h by Molmil
Mandelate oxidase mutant-Y128F with the peroxide FMN adduct
分子名称: 4-hydroxymandelate oxidase, [(2~{R},3~{S},4~{S})-5-[(4~{a}~{S})-4~{a}-(dioxidanyl)-7,8-dimethyl-2,4-bis(oxidanylidene)-5~{H}-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate
著者Li, T.L, Lin, K.H.
登録日2018-06-19
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Structural and chemical trapping of flavin-oxide intermediates reveals substrate-directed reaction multiplicity.
Protein Sci., 29, 2020
5ZZQ
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BU of 5zzq by Molmil
The crystal structure of Mandelate oxidase with (S)-4-Hydroxymandelic acid
分子名称: (2S)-hydroxy(4-hydroxyphenyl)ethanoic acid, 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE
著者Li, T.L, Lin, K.H.
登録日2018-06-04
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.32 Å)
主引用文献Biochemical and structural explorations of alpha-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction.
Acta Crystallogr D Struct Biol, 75, 2019
6A11
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BU of 6a11 by Molmil
Mandelate oxidase mutant-Y128F with phenylpyruvic acid
分子名称: 3-PHENYLPYRUVIC ACID, 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE
著者Li, T.L, Lin, K.H.
登録日2018-06-06
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Biochemical and structural explorations of alpha-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction.
Acta Crystallogr D Struct Biol, 75, 2019
6A1B
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BU of 6a1b by Molmil
Mandelate oxidase mutant-Y128F with 3,3,3-trifluoro-2,2-dihydroxypropanoic acid
分子名称: 3,3,3-trifluoro-2,2-dihydroxypropanoic acid, 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE
著者Li, T.L, Lin, K.H.
登録日2018-06-07
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Structural and chemical trapping of flavin-oxide intermediates reveals substrate-directed reaction multiplicity.
Protein Sci., 29, 2020
6A1M
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BU of 6a1m by Molmil
Mandelate oxidase mutant-Y128F with 5-deazariboflavin mononucleotide and benzoylformic acid
分子名称: 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-5-O-phosphono-D-ribitol, 4-hydroxymandelate oxidase, BENZOYL-FORMIC ACID, ...
著者Li, T.L, Lin, K.H.
登録日2018-06-07
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75, 2019
6A4G
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BU of 6a4g by Molmil
Mandelate oxidase mutant-Y128F with the monooxide FMN adduct
分子名称: 1-deoxy-1-[(4aS)-4a-hydroxy-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol, 4-hydroxymandelate oxidase
著者Li, T.L, Lin, K.H.
登録日2018-06-19
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Structural and chemical trapping of flavin-oxide intermediates reveals substrate-directed reaction multiplicity.
Protein Sci., 29, 2020
5YD0
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BU of 5yd0 by Molmil
Crystal structure of Schlafen 13 (SLFN13) N'-domain
分子名称: Schlafen 8, ZINC ION
著者Yang, J.-Y, Gao, S.
登録日2017-09-09
公開日2018-03-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3.182 Å)
主引用文献Structure of Schlafen13 reveals a new class of tRNA/rRNA- targeting RNase engaged in translational control
Nat Commun, 9, 2018
7X8K
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BU of 7x8k by Molmil
Arabidopsis GDP-D-mannose pyrophosphorylase (VTC1) structure (product-bound)
分子名称: CITRATE ANION, GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE, Mannose-1-phosphate guanylyltransferase 1, ...
著者Zhao, S, Zhang, C, Liu, L.
登録日2022-03-13
公開日2022-05-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal Structures of Arabidopsis thaliana GDP-D-Mannose Pyrophosphorylase VITAMIN C DEFECTIVE 1.
Front Plant Sci, 13, 2022
7X8J
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BU of 7x8j by Molmil
Arabidopsis GDP-D-mannose pyrophosphorylase (VTC1) structure (unliganded)
分子名称: Mannose-1-phosphate guanylyltransferase 1, SULFATE ION
著者Zhao, S, Zhang, C, Liu, L.
登録日2022-03-13
公開日2022-05-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.798 Å)
主引用文献Crystal Structures of Arabidopsis thaliana GDP-D-Mannose Pyrophosphorylase VITAMIN C DEFECTIVE 1.
Front Plant Sci, 13, 2022
6L1H
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BU of 6l1h by Molmil
Crystal structure of light-dependent protochlorophyllide oxidoreductase from Thermosynechococcus elongatus
分子名称: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-protochlorophyllide oxidoreductase
著者Dong, C, Wang, X, Liu, L.
登録日2019-09-29
公開日2020-04-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.409 Å)
主引用文献Crystal structures of cyanobacterial light-dependent protochlorophyllide oxidoreductase.
Proc.Natl.Acad.Sci.USA, 117, 2020
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