5GHA
| Sulfur Transferase TtuA in complex with Sulfur Carrier TtuB | 分子名称: | 1,2-ETHANEDIOL, SULFATE ION, Sulfur Carrier TtuB, ... | 著者 | Chen, M, Narai, S, Tanaka, Y, Yao, M. | 登録日 | 2016-06-19 | 公開日 | 2017-05-03 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.502 Å) | 主引用文献 | Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA Proc. Natl. Acad. Sci. U.S.A., 114, 2017
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5E1Q
| Mutant (D415G) GH97 alpha-galactosidase in complex with Gal-Lac | 分子名称: | CALCIUM ION, GLYCEROL, Retaining alpha-galactosidase, ... | 著者 | Matsunaga, K, Yamashita, K, Tagami, T, Yao, M, Okuyama, M, Kimura, A. | 登録日 | 2015-09-30 | 公開日 | 2016-10-05 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.943 Å) | 主引用文献 | Efficient synthesis of alpha-galactosyl oligosaccharides using a mutant Bacteroides thetaiotaomicron retaining alpha-galactosidase (BtGH97b). FEBS J., 284, 2017
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1GD6
| STRUCTURE OF THE BOMBYX MORI LYSOZYME | 分子名称: | LYSOZYME | 著者 | Matsuura, A, Aizawa, T, Yao, M, Kawano, K, Tanaka, I, Nitta, K. | 登録日 | 2000-09-19 | 公開日 | 2001-03-21 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Structural analysis of an insect lysozyme exhibiting catalytic efficiency at low temperatures. Biochemistry, 41, 2002
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5IP2
| Tomato spotted wilt tospovirus nucleocapsid protein-ssRNA complex | 分子名称: | Nucleoprotein, RNA (5'-D(P*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | 著者 | Komoda, K, Narita, M, Yamashita, K, Tanaka, I, Yao, M. | 登録日 | 2016-03-09 | 公開日 | 2017-03-22 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3.3 Å) | 主引用文献 | Asymmetric Trimeric Ring Structure of the Nucleocapsid Protein of Tospovirus. J. Virol., 91, 2017
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5IP1
| Tomato spotted wilt tospovirus nucleocapsid protein | 分子名称: | Nucleoprotein | 著者 | Komoda, K, Narita, M, Yamashita, K, Tanaka, I, Yao, M. | 登録日 | 2016-03-09 | 公開日 | 2017-03-22 | 最終更新日 | 2018-03-21 | 実験手法 | X-RAY DIFFRACTION (2.703 Å) | 主引用文献 | Asymmetric Trimeric Ring Structure of the Nucleocapsid Protein of Tospovirus. J. Virol., 91, 2017
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3A8E
| The structure of AxCesD octamer complexed with cellopentaose | 分子名称: | Cellulose synthase operon protein D, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose | 著者 | Hu, S.Q, Tajima, K, Zhou, Y, Yao, M, Tanaka, I. | 登録日 | 2009-10-05 | 公開日 | 2010-09-22 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Structure of bacterial cellulose synthase subunit D octamer with four inner passageways Proc.Natl.Acad.Sci.USA, 107, 2010
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5IP3
| Tomato spotted wilt tospovirus nucleocapsid protein-ssDNA complex | 分子名称: | DNA (5'-D(P*TP*TP*TP*TP*T)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*T)-3'), ... | 著者 | Komoda, K, Narita, M, Yamashita, K, Tanaka, I, Yao, M. | 登録日 | 2016-03-09 | 公開日 | 2017-03-22 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Asymmetric Trimeric Ring Structure of the Nucleocapsid Protein of Tospovirus. J. Virol., 91, 2017
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3AJ2
| The structure of AxCeSD octamer (C-terminal HIS-tag) from Acetobacter xylinum | 分子名称: | Cellulose synthase operon protein D | 著者 | Hu, S.Q, Tajima, K, Zhou, Y, Tanaka, I, Yao, M. | 登録日 | 2010-05-20 | 公開日 | 2010-10-06 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Structure of bacterial cellulose synthase subunit D octamer with four inner passageways Proc.Natl.Acad.Sci.USA, 107, 2010
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3AJ1
| The structure of AxCeSD octamer (N-terminal HIS-tag) from Acetobacter xylinum | 分子名称: | Cellulose synthase operon protein D | 著者 | Hu, S.Q, Tajima, K, Zhou, Y, Tanaka, I, Yao, M. | 登録日 | 2010-05-20 | 公開日 | 2010-10-06 | 最終更新日 | 2024-10-16 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Structure of bacterial cellulose synthase subunit D octamer with four inner passageways Proc.Natl.Acad.Sci.USA, 107, 2010
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1IQ4
| 5S-RRNA BINDING RIBOSOMAL PROTEIN L5 FROM BACILLUS STEAROTHERMOPHILUS | 分子名称: | 50S RIBOSOMAL PROTEIN L5 | 著者 | Nakashima, T, Yao, M, Kawamura, S, Iwasaki, K, Kimura, M, Tanaka, I. | 登録日 | 2001-06-13 | 公開日 | 2001-06-27 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Ribosomal protein L5 has a highly twisted concave surface and flexible arms responsible for rRNA binding. RNA, 7, 2001
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1J0C
| ACC deaminase mutated to catalytic residue | 分子名称: | 1-aminocyclopropane-1-carboxylate deaminase, PYRIDOXAL-5'-PHOSPHATE | 著者 | Ose, T, Fujino, A, Yao, M, Honma, M, Tanaka, I. | 登録日 | 2002-11-12 | 公開日 | 2003-05-12 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | Reaction intermediate structures of 1-aminocyclopropane-1-carboxylate deaminase: insight into PLP-dependent cyclopropane ring-opening reaction J.BIOL.CHEM., 278, 2003
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1J0B
| Crystal Structure Analysis of the ACC deaminase homologue complexed with inhibitor | 分子名称: | 1-aminocyclopropane-1-carboxylate deaminase, N-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-Y-LMETHYL]-1-AMINO-CYCLOPROPANECARBOXYLIC ACID | 著者 | Fujino, A, Ose, T, Honma, M, Yao, M, Tanaka, I. | 登録日 | 2002-11-12 | 公開日 | 2003-05-12 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Structural and enzymatic properties of 1-aminocyclopropane-1-carboxylate deaminase homologue from Pyrococcus horikoshii J.Mol.Biol., 341, 2004
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4P1Y
| Crystal structure of staphylococcal gamma-hemolysin prepore | 分子名称: | Gamma-hemolysin component A, Gamma-hemolysin component B | 著者 | Yamashita, D, Tanaka, Y, Tanaka, I, Yao, M. | 登録日 | 2014-02-28 | 公開日 | 2014-10-01 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.992 Å) | 主引用文献 | Molecular basis of transmembrane beta-barrel formation of staphylococcal pore-forming toxins. Nat Commun, 5, 2014
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4P1X
| Crystal structure of staphylococcal LUK prepore | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, Gamma-hemolysin component B, Gamma-hemolysin component C | 著者 | Yamashita, D, Tanaka, Y, Tanaka, I, Yao, M. | 登録日 | 2014-02-28 | 公開日 | 2014-10-01 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Molecular basis of transmembrane beta-barrel formation of staphylococcal pore-forming toxins. Nat Commun, 5, 2014
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3IP4
| The high resolution structure of GatCAB | 分子名称: | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, Glutamyl-tRNA(Gln) amidotransferase subunit A, ... | 著者 | Nakamura, A, Yao, M, Tanaka, I. | 登録日 | 2009-08-17 | 公開日 | 2009-11-24 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Two distinct regions in Staphylococcus aureus GatCAB guarantee accurate tRNA recognition Nucleic Acids Res., 38, 2010
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5AYE
| Crystal structure of Ruminococcus albus beta-(1,4)-mannooligosaccharide phosphorylase (RaMP2) in complexes with phosphate and beta-(1,4)-mannobiose | 分子名称: | Beta-1,4-mannooligosaccharide phosphorylase, PHOSPHATE ION, beta-D-mannopyranose-(1-4)-beta-D-mannopyranose | 著者 | Ye, Y, Saburi, W, Kato, K, Yao, M. | 登録日 | 2015-08-13 | 公開日 | 2016-03-23 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structural insights into the difference in substrate recognition of two mannoside phosphorylases from two GH130 subfamilies. Febs Lett., 590, 2016
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5B4F
| Sulfur Transferase TtuA in complex with iron sulfur cluster | 分子名称: | IRON/SULFUR CLUSTER, SULFATE ION, Sulfur Transferase TtuA, ... | 著者 | Chen, M, Narai, S, Tanaka, Y, Yao, M. | 登録日 | 2016-04-03 | 公開日 | 2017-05-10 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA Proc. Natl. Acad. Sci. U.S.A., 114, 2017
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5AYD
| Crystal structure of Ruminococcus albus beta-(1,4)-mannooligosaccharide phosphorylase (RaMP2) in complexes with phosphate | 分子名称: | Beta-1,4-mannooligosaccharide phosphorylase, PHOSPHATE ION | 著者 | Ye, Y, Saburi, W, Kato, K, Yao, M. | 登録日 | 2015-08-13 | 公開日 | 2016-03-23 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structural insights into the difference in substrate recognition of two mannoside phosphorylases from two GH130 subfamilies. Febs Lett., 590, 2016
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5AY9
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5B4E
| Sulfur Transferase TtuA in complex with iron sulfur cluster and ATP derivative | 分子名称: | IRON/SULFUR CLUSTER, ISOPROPYL ALCOHOL, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... | 著者 | Chen, M, Narai, S, Tanaka, Y, Yao, M. | 登録日 | 2016-04-03 | 公開日 | 2017-05-03 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.698 Å) | 主引用文献 | Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA Proc. Natl. Acad. Sci. U.S.A., 114, 2017
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5AYC
| Crystal structure of Ruminococcus albus 4-O-beta-D-mannosyl-D-glucose phosphorylase (RaMP1) in complexes with sulfate and 4-O-beta-D-mannosyl-D-glucose | 分子名称: | 4-O-beta-D-mannosyl-D-glucose phosphorylase, SULFATE ION, beta-D-mannopyranose-(1-4)-beta-D-glucopyranose | 著者 | Ye, Y, Saburi, W, Kato, K, Yao, M. | 登録日 | 2015-08-13 | 公開日 | 2016-03-23 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Structural insights into the difference in substrate recognition of two mannoside phosphorylases from two GH130 subfamilies. Febs Lett., 590, 2016
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5H7K
| Crystal structure of Elongation factor 2 GDP-form | 分子名称: | Elongation factor 2, GUANOSINE-5'-DIPHOSPHATE | 著者 | Tanzawa, T, Kato, K, Uchiumi, T, Yao, M. | 登録日 | 2016-11-18 | 公開日 | 2018-02-21 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.599 Å) | 主引用文献 | The C-terminal helix of ribosomal P stalk recognizes a hydrophobic groove of elongation factor 2 in a novel fashion Nucleic Acids Res., 46, 2018
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5H7L
| Complex of Elongation factor 2-50S ribosomal protein L12 | 分子名称: | 50S ribosomal protein L12, Elongation factor 2, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER | 著者 | Tanzawa, T, Kato, K, Uchiumi, T, Yao, M. | 登録日 | 2016-11-18 | 公開日 | 2018-02-21 | 最終更新日 | 2024-10-16 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | The C-terminal helix of ribosomal P stalk recognizes a hydrophobic groove of elongation factor 2 in a novel fashion Nucleic Acids Res., 46, 2018
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1IXL
| Crystal structure of uncharacterized protein PH1136 from Pyrococcus horikoshii | 分子名称: | hypothetical protein PH1136 | 著者 | Tajika, Y, Sakai, N, Tanaka, Y, Yao, M, Watanabe, N, Tanaka, I. | 登録日 | 2002-06-27 | 公開日 | 2003-09-09 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.94 Å) | 主引用文献 | Crystal structure of conserved protein PH1136 from Pyrococcus horikoshii. Proteins, 55, 2004
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1J08
| Crystal structure of glutaredoxin-like protein from Pyrococcus horikoshii | 分子名称: | glutaredoxin-like protein | 著者 | Tanaka, Y, Tanabe, E, Tsumoto, K, Kumagai, I, Yao, M, Tanaka, I. | 登録日 | 2002-11-11 | 公開日 | 2003-05-11 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Protein disulfide isomerase from hyperthermophile as an additives of refolding of an immunoglobulin-folded protein To be Published
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