2DXB
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![BU of 2dxb by Molmil](/molmil-images/mine/2dxb) | Recombinant thiocyanate hydrolase comprising partially-modified cobalt centers | 分子名称: | COBALT (III) ION, PHOSPHATE ION, Thiocyanate hydrolase subunit alpha, ... | 著者 | Arakawa, T, Kawano, Y, Katayama, Y, Yohda, M, Odaka, M. | 登録日 | 2006-08-25 | 公開日 | 2007-08-28 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification J.Am.Chem.Soc., 131, 2009
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3VYH
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![BU of 3vyh by Molmil](/molmil-images/mine/3vyh) | Crystal structure of aW116R mutant of nitrile hydratase from Pseudonocardia thermophilla | 分子名称: | COBALT (II) ION, Cobalt-containing nitrile hydratase subunit alpha, Cobalt-containing nitrile hydratase subunit beta | 著者 | Yamanaka, Y, Sato, M, Arakawa, T, Namima, S, Hori, S, Ohtaki, A, Noguchi, K, Katayama, Y, Yohda, M, Odaka, M. | 登録日 | 2012-09-25 | 公開日 | 2013-11-13 | 最終更新日 | 2023-12-06 | 実験手法 | X-RAY DIFFRACTION (1.63 Å) | 主引用文献 | Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase To be published
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3VYG
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![BU of 3vyg by Molmil](/molmil-images/mine/3vyg) | Crystal structure of Thiocyanate hydrolase mutant R136W | 分子名称: | COBALT (III) ION, L(+)-TARTARIC ACID, Thiocyanate hydrolase subunit alpha, ... | 著者 | Yamanaka, Y, Sato, M, Arakawa, T, Namima, S, Hori, S, Ohtaki, A, Noguchi, K, Katayama, Y, Yohda, M, Odaka, M. | 登録日 | 2012-09-25 | 公開日 | 2013-11-13 | 最終更新日 | 2023-12-06 | 実験手法 | X-RAY DIFFRACTION (1.72 Å) | 主引用文献 | Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase To be published
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3WVE
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![BU of 3wve by Molmil](/molmil-images/mine/3wve) | Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, before photo-activation | 分子名称: | 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ... | 著者 | Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M. | 登録日 | 2014-05-17 | 公開日 | 2015-06-17 | 最終更新日 | 2015-11-04 | 実験手法 | X-RAY DIFFRACTION (1.57 Å) | 主引用文献 | Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile. Angew.Chem.Int.Ed.Engl., 54, 2015
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3WVD
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![BU of 3wvd by Molmil](/molmil-images/mine/3wvd) | Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 50 min | 分子名称: | 2,2-dimethylpropanenitrile, FE (III) ION, MAGNESIUM ION, ... | 著者 | Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M. | 登録日 | 2014-05-17 | 公開日 | 2015-06-17 | 最終更新日 | 2015-11-04 | 実験手法 | X-RAY DIFFRACTION (1.18 Å) | 主引用文献 | Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile. Angew.Chem.Int.Ed.Engl., 54, 2015
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3WE1
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![BU of 3we1 by Molmil](/molmil-images/mine/3we1) | Crystal structure of Dengue 4 Envelope protein domain III (ED3) | 分子名称: | Envelope protein E | 著者 | Elahi, M, Islam, M.M, Noguchi, K, Yohda, M, Toh, H, Kuroda, Y. | 登録日 | 2013-06-27 | 公開日 | 2014-01-22 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.278 Å) | 主引用文献 | Computational prediction and experimental characterization of a "size switch type repacking" during the evolution of dengue envelope protein domain III (ED3). Biochim.Biophys.Acta, 1844, 2014
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3X26
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![BU of 3x26 by Molmil](/molmil-images/mine/3x26) | Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 5 min | 分子名称: | 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ... | 著者 | Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M. | 登録日 | 2014-12-10 | 公開日 | 2016-01-27 | 実験手法 | X-RAY DIFFRACTION (1.34 Å) | 主引用文献 | Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile. Angew.Chem.Int.Ed.Engl., 54, 2015
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3X25
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![BU of 3x25 by Molmil](/molmil-images/mine/3x25) | Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 700 min | 分子名称: | 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ... | 著者 | Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M. | 登録日 | 2014-12-10 | 公開日 | 2016-01-27 | 実験手法 | X-RAY DIFFRACTION (1.2 Å) | 主引用文献 | Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile. Angew.Chem.Int.Ed.Engl., 54, 2015
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3X20
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![BU of 3x20 by Molmil](/molmil-images/mine/3x20) | Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 25 min | 分子名称: | 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ... | 著者 | Yamanaka, Y, Hashimoto, K, Noguchi, N, Yohda, M, Odaka, M. | 登録日 | 2014-12-03 | 公開日 | 2016-01-27 | 実験手法 | X-RAY DIFFRACTION (1.18 Å) | 主引用文献 | Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile. Angew.Chem.Int.Ed.Engl., 54, 2015
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3X24
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![BU of 3x24 by Molmil](/molmil-images/mine/3x24) | Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 120 min | 分子名称: | 2,2-dimethylpropanenitrile, FE (III) ION, MAGNESIUM ION, ... | 著者 | Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M. | 登録日 | 2014-12-10 | 公開日 | 2016-01-27 | 実験手法 | X-RAY DIFFRACTION (1.24 Å) | 主引用文献 | Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile. Angew.Chem.Int.Ed.Engl., 54, 2015
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3X28
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![BU of 3x28 by Molmil](/molmil-images/mine/3x28) | Crystal structure of Nitrile Hydratase mutant bR56K | 分子名称: | CHLORIDE ION, FE (III) ION, MAGNESIUM ION, ... | 著者 | Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M. | 登録日 | 2014-12-12 | 公開日 | 2015-12-23 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | Reaction intermediate of nitrile hydratase determined by time-resolved crystallography reveals the cysteine-sulfenic acid ligand to be a catalytic nucleophile To be Published
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2ZCF
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![BU of 2zcf by Molmil](/molmil-images/mine/2zcf) | Mutational study on Alpha-Gln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771 | 分子名称: | FE (III) ION, MAGNESIUM ION, Nitrile hydratase subunit alpha, ... | 著者 | Takarada, H, Kawano, Y, Hashimoto, K, Nakayama, H, Ueda, S, Yohda, M, Kamiya, N, Dohmae, N, Maeda, M, Odaka, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-11-08 | 公開日 | 2007-11-20 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.43 Å) | 主引用文献 | Mutational study on alphaGln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771 Biosci.Biotechnol.Biochem., 70, 2006
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3AEI
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![BU of 3aei by Molmil](/molmil-images/mine/3aei) | Crystal structure of the prefoldin beta2 subunit from Thermococcus strain KS-1 | 分子名称: | CHLORIDE ION, Prefoldin beta subunit 2, SULFATE ION | 著者 | Ohtaki, A, Sugano, Y, Sato, T, Noguchi, K, Miyatake, H, Yohda, M. | 登録日 | 2010-02-08 | 公開日 | 2010-05-19 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Thermodynamic Characterization of the Interaction between Prefoldin and Group II Chaperonin J.Mol.Biol., 399, 2010
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2ZPF
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![BU of 2zpf by Molmil](/molmil-images/mine/2zpf) | Complex of Fe-type nitrile hydratase with tert-butylisonitrile, photo-activated for 18min at 293K | 分子名称: | FE (III) ION, MAGNESIUM ION, NITRIC OXIDE, ... | 著者 | Hashimoto, K, Suzuki, H, Taniguchi, K, Noguchi, T, Yohda, M, Odaka, M. | 登録日 | 2008-07-11 | 公開日 | 2008-10-21 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.482 Å) | 主引用文献 | Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile J.Biol.Chem., 283, 2008
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2ZPE
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![BU of 2zpe by Molmil](/molmil-images/mine/2zpe) | nitrosylated Fe-type nitrile hydratase with tert-butylisonitrile | 分子名称: | FE (III) ION, MAGNESIUM ION, NITRIC OXIDE, ... | 著者 | Hashimoto, K, Suzuki, H, Taniguchi, K, Noguchi, T, Yohda, M, Odaka, M. | 登録日 | 2008-07-10 | 公開日 | 2008-10-21 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.48 Å) | 主引用文献 | Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile J.Biol.Chem., 283, 2008
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2ZZD
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![BU of 2zzd by Molmil](/molmil-images/mine/2zzd) | Recombinant thiocyanate hydrolase, air-oxidized form of holo-enzyme | 分子名称: | COBALT (III) ION, L(+)-TARTARIC ACID, Thiocyanate hydrolase subunit alpha, ... | 著者 | Arakawa, T, Kawano, Y, Katayama, Y, Yohda, M, Odaka, M. | 登録日 | 2009-02-09 | 公開日 | 2009-10-13 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.78 Å) | 主引用文献 | Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification J.Am.Chem.Soc., 131, 2009
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3A14
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![BU of 3a14 by Molmil](/molmil-images/mine/3a14) | Crystal structure of DXR from Thermotoga maritima, in complex with NADPH | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, 1-deoxy-D-xylulose 5-phosphate reductoisomerase, MAGNESIUM ION, ... | 著者 | Takenoya, M, Ohtaki, A, Noguchi, K, Sasaki, Y, Ohsawa, K, Yohda, M, Yajima, S. | 登録日 | 2009-03-25 | 公開日 | 2010-04-07 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding. J.Struct.Biol., 2010
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3A8G
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![BU of 3a8g by Molmil](/molmil-images/mine/3a8g) | Crystal structure of Nitrile Hydratase mutant S113A complexed with Trimethylacetonitrile | 分子名称: | 2,2-dimethylpropanenitrile, FE (III) ION, MAGNESIUM ION, ... | 著者 | Yamanaka, Y, Hashimoto, K, Ohtaki, A, Noguchi, K, Yohda, M, Odaka, M. | 登録日 | 2009-10-06 | 公開日 | 2010-04-14 | 最終更新日 | 2021-11-10 | 実験手法 | X-RAY DIFFRACTION (1.11 Å) | 主引用文献 | Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase J.Biol.Inorg.Chem., 15, 2010
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3A8M
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![BU of 3a8m by Molmil](/molmil-images/mine/3a8m) | Crystal structure of Nitrile Hydratase mutant Y72F complexed with Trimethylacetonitrile | 分子名称: | 2,2-dimethylpropanenitrile, FE (III) ION, MAGNESIUM ION, ... | 著者 | Yamanaka, Y, Hashimoto, K, Ohtaki, A, Noguchi, K, Yohda, M, Odaka, M. | 登録日 | 2009-10-06 | 公開日 | 2010-04-14 | 最終更新日 | 2021-11-10 | 実験手法 | X-RAY DIFFRACTION (1.32 Å) | 主引用文献 | Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase J.Biol.Inorg.Chem., 15, 2010
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3A1K
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![BU of 3a1k by Molmil](/molmil-images/mine/3a1k) | Crystal structure of Rhodococcus sp. N771 Amidase | 分子名称: | Amidase | 著者 | Ohtaki, A, Noguchi, K, Sato, Y, Murata, K, Odaka, M, Yohda, M. | 登録日 | 2009-04-09 | 公開日 | 2009-11-03 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.17 Å) | 主引用文献 | Structure and characterization of amidase from Rhodococcus sp. N-771: Insight into the molecular mechanism of substrate recognition Biochim.Biophys.Acta, 1804, 2010
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3A06
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![BU of 3a06 by Molmil](/molmil-images/mine/3a06) | Crystal structure of DXR from Thermooga maritia, in complex with fosmidomycin and NADPH | 分子名称: | 1-deoxy-D-xylulose 5-phosphate reductoisomerase, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, MAGNESIUM ION, ... | 著者 | Takenoya, M, Ohtaki, A, Noguchi, K, Sasaki, Y, Ohsawa, K, Yohda, M, Yajima, S. | 登録日 | 2009-03-02 | 公開日 | 2010-03-16 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding J.Struct.Biol., 170, 2010
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3A8L
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![BU of 3a8l by Molmil](/molmil-images/mine/3a8l) | Crystal structure of photo-activation state of Nitrile Hydratase mutant S113A | 分子名称: | FE (III) ION, Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta | 著者 | Yamanaka, Y, Hashimoto, K, Ohtaki, A, Noguchi, K, Yohda, M, Odaka, M. | 登録日 | 2009-10-06 | 公開日 | 2010-04-14 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.63 Å) | 主引用文献 | Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase J.Biol.Inorg.Chem., 15, 2010
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2ZPH
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![BU of 2zph by Molmil](/molmil-images/mine/2zph) | Complex of Fe-type nitrile hydratase with tert-butylisonitrile, photo-activated for 340min at 293K | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (III) ION, MAGNESIUM ION, ... | 著者 | Hashimoto, K, Suzuki, H, Taniguchi, K, Noguchi, T, Yohda, M, Odaka, M. | 登録日 | 2008-07-11 | 公開日 | 2008-10-21 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.59 Å) | 主引用文献 | Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile J.Biol.Chem., 283, 2008
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3A8H
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![BU of 3a8h by Molmil](/molmil-images/mine/3a8h) | Crystal structure of Nitrile Hydratase mutant S113A complexed with Trimethylacetamide | 分子名称: | 2,2-dimethylpropanamide, FE (III) ION, Nitrile hydratase subunit alpha, ... | 著者 | Yamanaka, Y, Hashimoto, K, Ohtaki, A, Noguchi, K, Yohda, M, Odaka, M. | 登録日 | 2009-10-06 | 公開日 | 2010-04-14 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.66 Å) | 主引用文献 | Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase J.Biol.Inorg.Chem., 15, 2010
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2ZPG
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![BU of 2zpg by Molmil](/molmil-images/mine/2zpg) | Complex of Fe-type nitrile hydratase with tert-butylisonitrile, photo-activated for 120min at 293K | 分子名称: | FE (III) ION, MAGNESIUM ION, Nitrile hydratase subunit alpha, ... | 著者 | Hashimoto, K, Suzuki, H, Taniguchi, K, Noguchi, T, Yohda, M, Odaka, M. | 登録日 | 2008-07-11 | 公開日 | 2008-10-21 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.39 Å) | 主引用文献 | Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile J.Biol.Chem., 283, 2008
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