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2DXB
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BU of 2dxb by Molmil
Recombinant thiocyanate hydrolase comprising partially-modified cobalt centers
分子名称: COBALT (III) ION, PHOSPHATE ION, Thiocyanate hydrolase subunit alpha, ...
著者Arakawa, T, Kawano, Y, Katayama, Y, Yohda, M, Odaka, M.
登録日2006-08-25
公開日2007-08-28
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification
J.Am.Chem.Soc., 131, 2009
3VYH
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BU of 3vyh by Molmil
Crystal structure of aW116R mutant of nitrile hydratase from Pseudonocardia thermophilla
分子名称: COBALT (II) ION, Cobalt-containing nitrile hydratase subunit alpha, Cobalt-containing nitrile hydratase subunit beta
著者Yamanaka, Y, Sato, M, Arakawa, T, Namima, S, Hori, S, Ohtaki, A, Noguchi, K, Katayama, Y, Yohda, M, Odaka, M.
登録日2012-09-25
公開日2013-11-13
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
To be published
3VYG
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BU of 3vyg by Molmil
Crystal structure of Thiocyanate hydrolase mutant R136W
分子名称: COBALT (III) ION, L(+)-TARTARIC ACID, Thiocyanate hydrolase subunit alpha, ...
著者Yamanaka, Y, Sato, M, Arakawa, T, Namima, S, Hori, S, Ohtaki, A, Noguchi, K, Katayama, Y, Yohda, M, Odaka, M.
登録日2012-09-25
公開日2013-11-13
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
To be published
3WVE
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BU of 3wve by Molmil
Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, before photo-activation
分子名称: 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ...
著者Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M.
登録日2014-05-17
公開日2015-06-17
最終更新日2015-11-04
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
3WVD
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BU of 3wvd by Molmil
Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 50 min
分子名称: 2,2-dimethylpropanenitrile, FE (III) ION, MAGNESIUM ION, ...
著者Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M.
登録日2014-05-17
公開日2015-06-17
最終更新日2015-11-04
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
3WE1
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BU of 3we1 by Molmil
Crystal structure of Dengue 4 Envelope protein domain III (ED3)
分子名称: Envelope protein E
著者Elahi, M, Islam, M.M, Noguchi, K, Yohda, M, Toh, H, Kuroda, Y.
登録日2013-06-27
公開日2014-01-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.278 Å)
主引用文献Computational prediction and experimental characterization of a "size switch type repacking" during the evolution of dengue envelope protein domain III (ED3).
Biochim.Biophys.Acta, 1844, 2014
3X26
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BU of 3x26 by Molmil
Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 5 min
分子名称: 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ...
著者Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M.
登録日2014-12-10
公開日2016-01-27
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
3X25
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BU of 3x25 by Molmil
Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 700 min
分子名称: 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ...
著者Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M.
登録日2014-12-10
公開日2016-01-27
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
3X20
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BU of 3x20 by Molmil
Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 25 min
分子名称: 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ...
著者Yamanaka, Y, Hashimoto, K, Noguchi, N, Yohda, M, Odaka, M.
登録日2014-12-03
公開日2016-01-27
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
3X24
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BU of 3x24 by Molmil
Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 120 min
分子名称: 2,2-dimethylpropanenitrile, FE (III) ION, MAGNESIUM ION, ...
著者Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M.
登録日2014-12-10
公開日2016-01-27
実験手法X-RAY DIFFRACTION (1.24 Å)
主引用文献Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
3X28
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BU of 3x28 by Molmil
Crystal structure of Nitrile Hydratase mutant bR56K
分子名称: CHLORIDE ION, FE (III) ION, MAGNESIUM ION, ...
著者Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M.
登録日2014-12-12
公開日2015-12-23
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Reaction intermediate of nitrile hydratase determined by time-resolved crystallography reveals the cysteine-sulfenic acid ligand to be a catalytic nucleophile
To be Published
2ZCF
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BU of 2zcf by Molmil
Mutational study on Alpha-Gln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771
分子名称: FE (III) ION, MAGNESIUM ION, Nitrile hydratase subunit alpha, ...
著者Takarada, H, Kawano, Y, Hashimoto, K, Nakayama, H, Ueda, S, Yohda, M, Kamiya, N, Dohmae, N, Maeda, M, Odaka, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-11-08
公開日2007-11-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Mutational study on alphaGln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771
Biosci.Biotechnol.Biochem., 70, 2006
3AEI
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BU of 3aei by Molmil
Crystal structure of the prefoldin beta2 subunit from Thermococcus strain KS-1
分子名称: CHLORIDE ION, Prefoldin beta subunit 2, SULFATE ION
著者Ohtaki, A, Sugano, Y, Sato, T, Noguchi, K, Miyatake, H, Yohda, M.
登録日2010-02-08
公開日2010-05-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Thermodynamic Characterization of the Interaction between Prefoldin and Group II Chaperonin
J.Mol.Biol., 399, 2010
2ZPF
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BU of 2zpf by Molmil
Complex of Fe-type nitrile hydratase with tert-butylisonitrile, photo-activated for 18min at 293K
分子名称: FE (III) ION, MAGNESIUM ION, NITRIC OXIDE, ...
著者Hashimoto, K, Suzuki, H, Taniguchi, K, Noguchi, T, Yohda, M, Odaka, M.
登録日2008-07-11
公開日2008-10-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.482 Å)
主引用文献Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
2ZPE
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BU of 2zpe by Molmil
nitrosylated Fe-type nitrile hydratase with tert-butylisonitrile
分子名称: FE (III) ION, MAGNESIUM ION, NITRIC OXIDE, ...
著者Hashimoto, K, Suzuki, H, Taniguchi, K, Noguchi, T, Yohda, M, Odaka, M.
登録日2008-07-10
公開日2008-10-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
2ZZD
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BU of 2zzd by Molmil
Recombinant thiocyanate hydrolase, air-oxidized form of holo-enzyme
分子名称: COBALT (III) ION, L(+)-TARTARIC ACID, Thiocyanate hydrolase subunit alpha, ...
著者Arakawa, T, Kawano, Y, Katayama, Y, Yohda, M, Odaka, M.
登録日2009-02-09
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification
J.Am.Chem.Soc., 131, 2009
3A14
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BU of 3a14 by Molmil
Crystal structure of DXR from Thermotoga maritima, in complex with NADPH
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1-deoxy-D-xylulose 5-phosphate reductoisomerase, MAGNESIUM ION, ...
著者Takenoya, M, Ohtaki, A, Noguchi, K, Sasaki, Y, Ohsawa, K, Yohda, M, Yajima, S.
登録日2009-03-25
公開日2010-04-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding.
J.Struct.Biol., 2010
3A8G
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BU of 3a8g by Molmil
Crystal structure of Nitrile Hydratase mutant S113A complexed with Trimethylacetonitrile
分子名称: 2,2-dimethylpropanenitrile, FE (III) ION, MAGNESIUM ION, ...
著者Yamanaka, Y, Hashimoto, K, Ohtaki, A, Noguchi, K, Yohda, M, Odaka, M.
登録日2009-10-06
公開日2010-04-14
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.11 Å)
主引用文献Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase
J.Biol.Inorg.Chem., 15, 2010
3A8M
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BU of 3a8m by Molmil
Crystal structure of Nitrile Hydratase mutant Y72F complexed with Trimethylacetonitrile
分子名称: 2,2-dimethylpropanenitrile, FE (III) ION, MAGNESIUM ION, ...
著者Yamanaka, Y, Hashimoto, K, Ohtaki, A, Noguchi, K, Yohda, M, Odaka, M.
登録日2009-10-06
公開日2010-04-14
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.32 Å)
主引用文献Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase
J.Biol.Inorg.Chem., 15, 2010
3A1K
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BU of 3a1k by Molmil
Crystal structure of Rhodococcus sp. N771 Amidase
分子名称: Amidase
著者Ohtaki, A, Noguchi, K, Sato, Y, Murata, K, Odaka, M, Yohda, M.
登録日2009-04-09
公開日2009-11-03
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.17 Å)
主引用文献Structure and characterization of amidase from Rhodococcus sp. N-771: Insight into the molecular mechanism of substrate recognition
Biochim.Biophys.Acta, 1804, 2010
3A06
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BU of 3a06 by Molmil
Crystal structure of DXR from Thermooga maritia, in complex with fosmidomycin and NADPH
分子名称: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, MAGNESIUM ION, ...
著者Takenoya, M, Ohtaki, A, Noguchi, K, Sasaki, Y, Ohsawa, K, Yohda, M, Yajima, S.
登録日2009-03-02
公開日2010-03-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding
J.Struct.Biol., 170, 2010
3A8L
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BU of 3a8l by Molmil
Crystal structure of photo-activation state of Nitrile Hydratase mutant S113A
分子名称: FE (III) ION, Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta
著者Yamanaka, Y, Hashimoto, K, Ohtaki, A, Noguchi, K, Yohda, M, Odaka, M.
登録日2009-10-06
公開日2010-04-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase
J.Biol.Inorg.Chem., 15, 2010
2ZPH
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BU of 2zph by Molmil
Complex of Fe-type nitrile hydratase with tert-butylisonitrile, photo-activated for 340min at 293K
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (III) ION, MAGNESIUM ION, ...
著者Hashimoto, K, Suzuki, H, Taniguchi, K, Noguchi, T, Yohda, M, Odaka, M.
登録日2008-07-11
公開日2008-10-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
3A8H
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BU of 3a8h by Molmil
Crystal structure of Nitrile Hydratase mutant S113A complexed with Trimethylacetamide
分子名称: 2,2-dimethylpropanamide, FE (III) ION, Nitrile hydratase subunit alpha, ...
著者Yamanaka, Y, Hashimoto, K, Ohtaki, A, Noguchi, K, Yohda, M, Odaka, M.
登録日2009-10-06
公開日2010-04-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase
J.Biol.Inorg.Chem., 15, 2010
2ZPG
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BU of 2zpg by Molmil
Complex of Fe-type nitrile hydratase with tert-butylisonitrile, photo-activated for 120min at 293K
分子名称: FE (III) ION, MAGNESIUM ION, Nitrile hydratase subunit alpha, ...
著者Hashimoto, K, Suzuki, H, Taniguchi, K, Noguchi, T, Yohda, M, Odaka, M.
登録日2008-07-11
公開日2008-10-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008

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