5Y5Z
| V/A-type ATPase/synthase from Thermus thermophilus, rotational state 2 | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | 著者 | Nakanishi, A, Kishikawa, J, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. | 登録日 | 2017-08-10 | 公開日 | 2018-01-17 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (6.7 Å) | 主引用文献 | Cryo EM structure of intact rotary H+-ATPase/synthase from Thermus thermophilus Nat Commun, 9, 2018
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6ZJN
| Respiratory complex I from Thermus thermophilus, NADH dataset, minor state | 分子名称: | FE2/S2 (INORGANIC) CLUSTER, IRON/SULFUR CLUSTER, NADH-quinone oxidoreductase subunit 1, ... | 著者 | Kaszuba, K, Tambalo, M, Gallagher, G.T, Sazanov, L.A. | 登録日 | 2020-06-29 | 公開日 | 2020-09-02 | 最終更新日 | 2024-05-01 | 実験手法 | ELECTRON MICROSCOPY (6.1 Å) | 主引用文献 | Key role of quinone in the mechanism of respiratory complex I. Nat Commun, 11, 2020
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6ZIY
| Respiratory complex I from Thermus thermophilus, NADH dataset, major state | 分子名称: | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ... | 著者 | Kaszuba, K, Tambalo, M, Gallagher, G.T, Sazanov, L.A. | 登録日 | 2020-06-26 | 公開日 | 2020-09-02 | 実験手法 | ELECTRON MICROSCOPY (4.25 Å) | 主引用文献 | Key role of quinone in the mechanism of respiratory complex I. Nat Commun, 11, 2020
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6ZJL
| Respiratory complex I from Thermus thermophilus, NAD+ dataset, major state | 分子名称: | FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ... | 著者 | Kaszuba, K, Tambalo, M, Gallagher, G.T, Sazanov, L.A. | 登録日 | 2020-06-29 | 公開日 | 2020-09-02 | 実験手法 | ELECTRON MICROSCOPY (4.3 Å) | 主引用文献 | Key role of quinone in the mechanism of respiratory complex I. Nat Commun, 11, 2020
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6ZJY
| Respiratory complex I from Thermus thermophilus, NAD+ dataset, minor state | 分子名称: | FE2/S2 (INORGANIC) CLUSTER, IRON/SULFUR CLUSTER, NADH-quinone oxidoreductase subunit 1, ... | 著者 | Kaszuba, K, Tambalo, M, Gallagher, G.T, Sazanov, L.A. | 登録日 | 2020-06-29 | 公開日 | 2020-09-02 | 最終更新日 | 2024-05-01 | 実験手法 | ELECTRON MICROSCOPY (5.5 Å) | 主引用文献 | Key role of quinone in the mechanism of respiratory complex I. Nat Commun, 11, 2020
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7D6Q
| Crystal structure of the Stx2a | 分子名称: | 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, Shiga toxin 2 B subunit, rRNA N-glycosylase | 著者 | Takahashi, M, Tamada, M, Hibino, M, Senda, M, Okuda, A, Miyazawa, A, Senda, T, Nishikawa, K. | 登録日 | 2020-10-01 | 公開日 | 2021-04-14 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Identification of a peptide motif that potently inhibits two functionally distinct subunits of Shiga toxin. Commun Biol, 4, 2021
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7D6R
| Crystal structure of the Stx2a complexed with MMA betaAla peptide | 分子名称: | 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, MMA betaAla peptide, Shiga toxin 2 B subunit, ... | 著者 | Takahashi, M, Tamada, M, Hibino, M, Senda, M, Okuda, A, Miyazawa, A, Senda, T, Nishikawa, K. | 登録日 | 2020-10-01 | 公開日 | 2021-04-14 | 最終更新日 | 2024-10-09 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Identification of a peptide motif that potently inhibits two functionally distinct subunits of Shiga toxin. Commun Biol, 4, 2021
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7DHW
| Crystal structure of myosin-XI motor domain in complex with ADP-ALF4 | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ... | 著者 | Suzuki, K, Haraguchi, T, Tamanaha, M, Yoshimura, K, Imi, T, Tominaga, M, Sakayama, H, Nishiyama, T, Ito, K, Murata, T. | 登録日 | 2020-11-17 | 公開日 | 2021-05-19 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.84 Å) | 主引用文献 | Discovery of ultrafast myosin, its amino acid sequence, and structural features. Proc.Natl.Acad.Sci.USA, 119, 2022
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6MZ3
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3A24
| Crystal structure of BT1871 retaining glycosidase | 分子名称: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, alpha-galactosidase | 著者 | Okuyama, M, Kitamura, M, Hondoh, H, Tanaka, I, Yao, M. | 登録日 | 2009-04-28 | 公開日 | 2009-10-06 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Catalytic mechanism of retaining alpha-galactosidase belonging to glycoside hydrolase family 97. J.Mol.Biol., 392, 2009
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6LY9
| The membrane-embedded Vo domain of V/A-ATPase from Thermus thermophilus | 分子名称: | V-type ATP synthase subunit C, V-type ATP synthase subunit E, V-type ATP synthase subunit I, ... | 著者 | Kishikawa, J, Nakanishi, A, Furuta, A, Kato, T, Namba, K, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. | 登録日 | 2020-02-13 | 公開日 | 2020-09-09 | 最終更新日 | 2020-09-30 | 実験手法 | ELECTRON MICROSCOPY (3.93 Å) | 主引用文献 | Mechanical inhibition of isolated V o from V/A-ATPase for proton conductance. Elife, 9, 2020
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1IPA
| CRYSTAL STRUCTURE OF RNA 2'-O RIBOSE METHYLTRANSFERASE | 分子名称: | RNA 2'-O-RIBOSE METHYLTRANSFERASE | 著者 | Nureki, O, Shirouzu, M, Hashimoto, K, Ishitani, R, Terada, T, Tamakoshi, M, Oshima, T, Chijimatsu, M, Takio, K, Vassylyev, D.G, Shibata, T, Inoue, Y, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2001-05-02 | 公開日 | 2002-07-10 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | An enzyme with a deep trefoil knot for the active-site architecture. Acta Crystallogr.,Sect.D, 58, 2002
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6LY8
| V/A-ATPase from Thermus thermophilus, the soluble domain, including V1, d, two EG stalks, and N-terminal domain of a-subunit. | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | 著者 | Kishikawa, J, Nakanishi, A, Furuta, A, Kato, T, Namba, K, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. | 登録日 | 2020-02-13 | 公開日 | 2020-09-09 | 最終更新日 | 2020-09-30 | 実験手法 | ELECTRON MICROSCOPY (3.5 Å) | 主引用文献 | Mechanical inhibition of isolated V o from V/A-ATPase for proton conductance. Elife, 9, 2020
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7EG5
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1FLM
| DIMER OF FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F) | 分子名称: | FLAVIN MONONUCLEOTIDE, PROTEIN (FMN-BINDING PROTEIN) | 著者 | Suto, K, Kawagoe, K, Shibata, N, Morimoto, K, Higuchi, Y, Kitamura, M, Nakaya, T, Yasuoka, N. | 登録日 | 1999-03-10 | 公開日 | 2000-03-06 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | How do the x-ray structure and the NMR structure of FMN-binding protein differ? Acta Crystallogr.,Sect.D, 56, 2000
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2D00
| Subunit F of V-type ATPase/synthase | 分子名称: | CALCIUM ION, V-type ATP synthase subunit F | 著者 | Makyio, H, Iino, R, Ikeda, C, Imamura, H, Tamakoshi, M, Iwata, M, Stock, D, Bernal, R.A, Carpenter, E.P, Yoshida, M, Yokoyama, K, Iwata, S. | 登録日 | 2005-07-21 | 公開日 | 2005-12-06 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structure of a central stalk subunit F of prokaryotic V-type ATPase/synthase from Thermus thermophilus Embo J., 24, 2005
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2CVC
| Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Hildenborough) | 分子名称: | HEME C, High-molecular-weight cytochrome c precursor | 著者 | Suto, K, Sato, M, Shibata, N, Kitamura, M, Morimoto, Y, Takayama, Y, Ozawa, K, Akutsu, H, Higuchi, Y, Yasuoka, N. | 登録日 | 2005-06-02 | 公開日 | 2006-06-06 | 最終更新日 | 2019-10-02 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Structure of High-Molecular Weight Cytochrome c To be Published
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8ITO
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3A6R
| E13Q mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F) | 分子名称: | CHLORIDE ION, FLAVIN MONONUCLEOTIDE, FMN-binding protein | 著者 | Nakanishi, T, Haruyama, Y, Inoue, H, Kitamura, M. | 登録日 | 2009-09-08 | 公開日 | 2010-09-01 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.2 Å) | 主引用文献 | Effects of the disappearance of one charge on ultrafast fluorescence dynamics of the FMN binding protein. J.Phys.Chem.B, 114, 2010
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3A6Q
| E13T mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F) | 分子名称: | CHLORIDE ION, FLAVIN MONONUCLEOTIDE, FMN-binding protein | 著者 | Nakanishi, T, Haruyama, Y, Inoue, H, Kitamura, M. | 登録日 | 2009-09-08 | 公開日 | 2010-09-01 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | Effects of the disappearance of one charge on ultrafast fluorescence dynamics of the FMN binding protein. J.Phys.Chem.B, 114, 2010
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4P6Q
| The crystal structure of the Split End protein SHARP adds a new layer of complexity to proteins containing RNA Recognition Motifs | 分子名称: | Msx2-interacting protein, SULFATE ION | 著者 | Arieti, F, Gabus, C, Tambalo, M, Huet, T, Round, A, Thore, S. | 登録日 | 2014-03-25 | 公開日 | 2014-05-14 | 最終更新日 | 2023-12-20 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | The crystal structure of the Split End protein SHARP adds a new layer of complexity to proteins containing RNA recognition motifs. Nucleic Acids Res., 42, 2014
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3W8Q
| Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) | 分子名称: | Dual specificity mitogen-activated protein kinase kinase 1, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER | 著者 | Nakae, S, Kitamura, M, Shirai, T, Tada, T. | 登録日 | 2013-03-20 | 公開日 | 2014-03-26 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structure of mitogen-activated protein kinase kinase 1 in the DFG-out conformation. Acta Crystallogr.,Sect.F, 77, 2021
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2ZDJ
| Crystal Structure of TTMA177, a Hypothetical Protein from Thermus thermophilus phage TMA | 分子名称: | hypothetical protein TTMA177 | 著者 | Agari, Y, Tamakoshi, M, Yamagishi, A, Shinkai, A, Ebihara, A, Yokoyama, S, Kuramitsu, S, Oshima, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-11-26 | 公開日 | 2008-12-02 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Crystal Structure of TTMA177, a Hypothetical Protein from Thermus thermophilus phage TMA To be Published
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3W9A
| Crystal structure of the catalytic domain of the glycoside hydrolase family 131 protein from Coprinopsis cinerea | 分子名称: | GLYCEROL, Putative uncharacterized protein | 著者 | Miyazaki, T, Tanaka, Y, Tamura, M, Yoshida, M, Nishikawa, A, Tonozuka, T. | 登録日 | 2013-04-01 | 公開日 | 2013-05-22 | 最終更新日 | 2013-07-10 | 実験手法 | X-RAY DIFFRACTION (1.99 Å) | 主引用文献 | Crystal structure of the N-terminal domain of a glycoside hydrolase family 131 protein from Coprinopsis cinerea Febs Lett., 587, 2013
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3AWH
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