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6X9Z
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BU of 6x9z by Molmil
De novo design of transmembrane beta-barrels
分子名称: Transmembrane beta-barrels
著者Bera, A.K, Vorobieva, A.A, Kang, A.S, Baker, D.
登録日2020-06-03
公開日2021-02-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献De novo design of transmembrane beta barrels.
Science, 371, 2021
8SZZ
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BU of 8szz by Molmil
CryoEM Structure of Computationally Designed Nanocage O32-ZL4
分子名称: O32-ZL4 Component A, O32-ZL4 Component B, SODIUM ION
著者Weidle, C, Borst, A.
登録日2023-05-30
公開日2023-11-01
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023
8V3B
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BU of 8v3b by Molmil
Computational Designed Nanocage O43_129_+4
分子名称: O43_129_+4 component A, O43_129_+4 component B
著者Carr, K.D, Weidle, C, Borst, A.J.
登録日2023-11-27
公開日2024-03-13
最終更新日2024-04-10
実験手法ELECTRON MICROSCOPY (6.4 Å)
主引用文献Blueprinting extendable nanomaterials with standardized protein blocks.
Nature, 627, 2024
8V2D
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BU of 8v2d by Molmil
Computational Designed Nanocage O43_129
分子名称: O43_129 component A, O43_129 component B
著者Weidle, C, Kibler, R.D.
登録日2023-11-22
公開日2024-03-13
最終更新日2024-04-10
実験手法ELECTRON MICROSCOPY (6.77 Å)
主引用文献Blueprinting extendable nanomaterials with standardized protein blocks.
Nature, 627, 2024
6XNS
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BU of 6xns by Molmil
C3_crown-05
分子名称: C3_crown-05
著者Bick, M.J, Hsia, Y, Sankaran, B, Baker, D.
登録日2020-07-04
公開日2020-12-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.19 Å)
主引用文献Design of multi-scale protein complexes by hierarchical building block fusion.
Nat Commun, 12, 2021
6XT4
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BU of 6xt4 by Molmil
C3_HD-1069 (1BH-69) - fusion protein of helical bundle and repeat protein
分子名称: 1BH_69
著者Bick, M.J, Hsia, Y, Sankaran, B, Baker, D.
登録日2020-07-17
公開日2020-12-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Design of multi-scale protein complexes by hierarchical building block fusion.
Nat Commun, 12, 2021
6XSS
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BU of 6xss by Molmil
CryoEM structure of designed helical fusion protein C4_nat_HFuse-7900
分子名称: C4_nat_HFuse-7900
著者Redler, R.L, Edman, N.I, Baker, D, Ekiert, D, Bhabha, G.
登録日2020-07-16
公開日2020-12-23
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Design of multi-scale protein complexes by hierarchical building block fusion.
Nat Commun, 12, 2021
8VC8
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BU of 8vc8 by Molmil
Crystal structure of heme-loaded design: HEM_3.C9
分子名称: HEM_3.C9, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
著者Kalvet, I, Bera, A.K, Baker, D.
登録日2023-12-13
公開日2024-03-20
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Generalized biomolecular modeling and design with RoseTTAFold All-Atom.
Science, 384, 2024
8TL7
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BU of 8tl7 by Molmil
CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
分子名称: Computationally designed protein
著者Weidle, C, Borst, A.J.
登録日2023-07-26
公開日2024-03-13
最終更新日2024-04-10
実験手法ELECTRON MICROSCOPY (4.05 Å)
主引用文献Blueprinting extendable nanomaterials with standardized protein blocks.
Nature, 627, 2024
7UWY
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BU of 7uwy by Molmil
NMR solution structure of the De novo designed small beta-barrel protein 29_bp_sh3
分子名称: De novo designed small beta-barrel protein 29_bp_sh3
著者Peterson, F.C, Kim, D.E, Jensen, D.R, Saleem, A, Chow, C.M, Volkman, B.F, Baker, D.
登録日2022-05-04
公開日2023-03-22
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献De novo design of small beta barrel proteins.
Proc.Natl.Acad.Sci.USA, 120, 2023
7UWZ
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BU of 7uwz by Molmil
NMR solution structure of the De novo designed small beta-barrel protein 33_bp_sh3
分子名称: De novo designed small beta-barrel protein 33_bp_sh3
著者Peterson, F.C, Kim, D.E, Jensen, D.R, Saleem, A, Chow, C.M, Volkman, B.F, Baker, D.
登録日2022-05-04
公開日2023-03-22
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献De novo design of small beta barrel proteins.
Proc.Natl.Acad.Sci.USA, 120, 2023
7UR7
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BU of 7ur7 by Molmil
17_bp_sh3, a small beta-barrel de novo designed protein
分子名称: 17_bp_sh3
著者Bera, A.K, Kim, D, Baker, D.
登録日2022-04-21
公開日2023-03-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.21 Å)
主引用文献De novo design of small beta barrel proteins.
Proc.Natl.Acad.Sci.USA, 120, 2023
7RKC
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BU of 7rkc by Molmil
Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633
分子名称: ACETATE ION, D_3_633
著者Kennedy, M.A, Stoddard, B.L, Hicks, D.R, Bera, A.K.
登録日2021-07-22
公開日2022-05-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献De novo design of protein homodimers containing tunable symmetric protein pockets.
Proc.Natl.Acad.Sci.USA, 119, 2022
7UNJ
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BU of 7unj by Molmil
De novo designed chlorophyll dimer protein with Zn pheophorbide a methyl ester matching geometry of purple bacterial special pair, SP1-ZnPPaM
分子名称: 1,2-ETHANEDIOL, SP1-ZnPPaM designed chlorophyll dimer protein, SULFATE ION, ...
著者Kennedy, M.A, Stoddard, B.L, Ennist, N.M.
登録日2022-04-11
公開日2023-04-19
最終更新日2024-06-12
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献De novo design of proteins housing excitonically coupled chlorophyll special pairs.
Nat.Chem.Biol., 2024
7UNH
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BU of 7unh by Molmil
De novo designed chlorophyll dimer protein in apo state, SP2
分子名称: 1,2-ETHANEDIOL, SP2 designed chlorophyll dimer protein
著者Kennedy, M.A, Stoddard, B.L, Ennist, N.M.
登録日2022-04-11
公開日2023-04-19
最終更新日2024-06-12
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献De novo design of proteins housing excitonically coupled chlorophyll special pairs.
Nat.Chem.Biol., 2024
7UNI
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BU of 7uni by Molmil
De novo designed chlorophyll dimer protein with Zn pheophorbide a methyl ester, SP2-ZnPPaM
分子名称: 1,2-ETHANEDIOL, PHOSPHATE ION, SP2-ZnPPaM designed chlorophyll dimer protein, ...
著者Kennedy, M.A, Stoddard, B.L, Ennist, N.M.
登録日2022-04-11
公開日2023-04-19
最終更新日2024-06-12
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献De novo design of proteins housing excitonically coupled chlorophyll special pairs.
Nat.Chem.Biol., 2024
7UR8
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BU of 7ur8 by Molmil
170_h_ob, a small beta-barrel de novo designed protein
分子名称: 170_h_ob
著者Bera, A.K, Kim, D, Baker, D.
登録日2022-04-21
公開日2023-03-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献De novo design of small beta barrel proteins.
Proc.Natl.Acad.Sci.USA, 120, 2023
7M0Q
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BU of 7m0q by Molmil
Crystal structure of deep network hallucinated protein 0738_mod
分子名称: Network hallucinated protein 0738_mod
著者Pellock, S.J, Bera, A.K, Anishchenko, I, Baker, D.
登録日2021-03-11
公開日2021-12-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献De novo protein design by deep network hallucination.
Nature, 600, 2021
6X1K
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BU of 6x1k by Molmil
Solution NMR structure of de novo designed TMB2.3
分子名称: De novo designed transmembrane beta-barrel TMB2.3
著者Liang, B, Vorobieva, A.A, Chow, C.M, Baker, D, Tamm, L.K.
登録日2020-05-19
公開日2021-02-17
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献De novo design of transmembrane beta barrels.
Science, 371, 2021
7M5T
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BU of 7m5t by Molmil
Solution NMR structure of de novo designed protein 0515
分子名称: De novo designed protein 0515
著者Ramelot, T.A, Hao, J, Baker, D, Montelione, G.T.
登録日2021-03-24
公開日2021-12-15
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献De novo protein design by deep network hallucination.
Nature, 600, 2021
8CWY
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BU of 8cwy by Molmil
Accurate computational design of genetically encoded 3D protein crystals
分子名称: T32-15-1, T32-15-2
著者Li, Z, Borst, A.J, Baker, D.
登録日2022-05-19
公開日2023-11-01
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (3.34 Å)
主引用文献Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023
8CUS
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BU of 8cus by Molmil
Accurate computational design of genetically encoded 3D protein crystals
分子名称: I432-1(NaCl) Chain A, I432-1(NaCl) Chain B
著者Bera, A.K, Li, Z, Baker, D.
登録日2022-05-17
公開日2023-11-01
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.98 Å)
主引用文献Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023
8CUT
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BU of 8cut by Molmil
Accurate computational design of genetically encoded 3D protein crystals
分子名称: I432-1(Imd) Chain A, I432-1(Imd) Chain B
著者Bera, A.K, Li, Z, Baker, D.
登録日2022-05-17
公開日2023-11-01
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023
8CUW
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BU of 8cuw by Molmil
Accurate computational design of genetically encoded 3D protein crystals
分子名称: F4132-1-3 Chain A, F4132-1-3 Chain B
著者Bera, A.K, Li, Z, Baker, D.
登録日2022-05-17
公開日2023-11-01
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.55 Å)
主引用文献Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023
8CUX
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BU of 8cux by Molmil
Accurate computational design of genetically encoded 3D protein crystals
分子名称: R3-1 Chain B
著者Bera, A.K, Natterman, U, Baker, D.
登録日2022-05-17
公開日2023-11-01
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023

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件を2024-07-24に公開中

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