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8ADB
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BU of 8adb by Molmil
Viral tegument-like DUBs
分子名称: CITRIC ACID, Polyubiquitin-C, Wc-VDT1, ...
著者Erven, I, Abraham, E.T, Hermanns, T, Baumann, U, Hofmann, K.
登録日2022-07-08
公開日2023-02-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献A widely distributed family of eukaryotic and bacterial deubiquitinases related to herpesviral large tegument proteins.
Nat Commun, 13, 2022
8ADC
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BU of 8adc by Molmil
Viral tegument-like DUBs
分子名称: Viral deubiquitinating enzyme
著者Erven, I, Abraham, E.T, Hermanns, T, Baumann, U, Hofmann, K.
登録日2022-07-08
公開日2023-02-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A widely distributed family of eukaryotic and bacterial deubiquitinases related to herpesviral large tegument proteins.
Nat Commun, 13, 2022
8CMR
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BU of 8cmr by Molmil
Linear specific OTU-type DUB SnOTU from the pathogen S. negenvensis in complex with linear di-ubiquitin
分子名称: OTU domain-containing protein, Polyubiquitin-B
著者Uthoff, M, Hermanns, T, Boll, V, Hofmann, K, Baumann, U.
登録日2023-02-21
公開日2023-11-22
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献Functional and structural diversity in deubiquitinases of the Chlamydia-like bacterium Simkania negevensis.
Nat Commun, 14, 2023
4PHY
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BU of 4phy by Molmil
Functional conservation despite structural divergence in ligand-responsive RNA switches
分子名称: ACETATE ION, MAGNESIUM ION, RNA (26-MER), ...
著者Boerneke, M.A, Dibrov, S.M, Hermann, T.H.
登録日2014-05-07
公開日2015-02-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Functional conservation despite structural divergence in ligand-responsive RNA switches.
Proc.Natl.Acad.Sci.USA, 111, 2014
4P97
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BU of 4p97 by Molmil
Functional conservation despite structural divergence in ligand-responsive RNA switches
分子名称: CALCIUM ION, RNA (5'-R(*CP*GP*AP*GP*AP*GP*GP*AP*CP*GP*G)-3'), RNA (5'-R(*CP*GP*UP*CP*UP*AP*CP*CP*CP*AP*CP*CP*UP*CP*GP*C)-3')
著者Boerneke, M.A, Dibrov, S.M, Hermann, T.H.
登録日2014-04-02
公開日2015-03-04
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Functional conservation despite structural divergence in ligand-responsive RNA switches.
Proc.Natl.Acad.Sci.USA, 111, 2014
3LOA
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BU of 3loa by Molmil
Crystal Structure Analysis of the RNA construct with two adjacent ligand binding sites of helix h44 in 16S ribosomal RNA
分子名称: 5'-R(*CP*CP*GP*CP*GP*CP*CP*CP*GP*(5BU)P*CP*AP*CP*AP*CP*CP*AP*CP*CP*CP*G)-3', 5'-R(*GP*GP*GP*(5BU)P*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*UP*AP*AP*CP*GP*CP*GP*GP*C)-3', MAGNESIUM ION, ...
著者Dibrov, S.
登録日2010-02-03
公開日2010-08-04
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.299 Å)
主引用文献A model for the study of ligand binding to the ribosomal RNA helix h44.
Nucleic Acids Res., 38, 2010
3BR9
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BU of 3br9 by Molmil
Crystal Structure of HCV NS5B Polymerase with a Novel Pyridazinone Inhibitor
分子名称: (2R)-2-({3-[5-hydroxy-2-(3-methylbutyl)-3-oxo-6-thiophen-2-yl-2,3-dihydropyridazin-4-yl]-1,1-dioxido-2H-1,2,4-benzothia diazin-7-yl}oxy)propanamide, RNA-directed RNA polymerase
著者Zhao, Q, Showalter, R.E, Han, Q, Kissinger, C.R.
登録日2007-12-21
公開日2008-12-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Novel HCV NS5B polymerase inhibitors derived from 4-(1',1'-dioxo-1',4'-dihydro-1'lambda6-benzo[1',2',4']thiadiazin-3'-yl)-5-hydroxy-2H-pyridazin-3-ones. Part 1: exploration of 7'-substitution of benzothiadiazine.
Bioorg.Med.Chem.Lett., 18, 2008
3BSC
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BU of 3bsc by Molmil
Crystal Structure of HCV NS5B Polymerase with a Novel Pyridazinone Inhibitor
分子名称: 5-hydroxy-4-(7-methoxy-1,1-dioxido-2H-1,2,4-benzothiadiazin-3-yl)-2-(3-methylbutyl)-6-phenylpyridazin-3(2H)-one, RNA-directed RNA polymerase
著者Zhao, Q, Showalter, R.E, Han, Q, Kissinger, C.R.
登録日2007-12-23
公開日2008-12-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Novel HCV NS5B polymerase inhibitors derived from 4-(1',1'-dioxo-1',4'-dihydro-1'lambda6-benzo[1',2',4']thiadiazin-3'-yl)-5-hydroxy-2H-pyridazin-3-ones. Part 1: exploration of 7'-substitution of benzothiadiazine.
Bioorg.Med.Chem.Lett., 18, 2008
3BSA
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BU of 3bsa by Molmil
Crystal Structure of HCV NS5B Polymerase with a Novel Pyridazinone Inhibitor
分子名称: 2-({3-[5-hydroxy-2-(3-methylbutyl)-3-oxo-6-(1,3-thiazol-5-yl)-2,3-dihydropyridazin-4-yl]-1,1-dioxido-2H-1,2,4-benzothia diazin-7-yl}oxy)acetamide, RNA-directed RNA polymerase
著者Han, Q, Showalter, R.E, Zhao, Q, Kissinger, C.R.
登録日2007-12-23
公開日2008-12-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Novel HCV NS5B polymerase inhibitors derived from 4-(1',1'-dioxo-1',4'-dihydro-1'lambda6-benzo[1',2',4']thiadiazin-3'-yl)-5-hydroxy-2H-pyridazin-3-ones. Part 1: exploration of 7'-substitution of benzothiadiazine.
Bioorg.Med.Chem.Lett., 18, 2008
2NOK
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BU of 2nok by Molmil
Crystal Structure of an RNA domain from Hepatitis C virus.
分子名称: 5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP*AP*CP*GP*CP*C)-3', 5'-R(*GP*CP*GP*UP*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*UP*CP*CP*GP*G)-3', MAGNESIUM ION, ...
著者Dibrov, S.M, Johnston-Cos, H, Weng, Y.H.
登録日2006-10-25
公開日2007-02-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Functional architecture of HCV IRES domain II stabilized by divalent metal ions in the crystal and in solution.
Angew.Chem.Int.Ed.Engl., 46, 2007
2PN4
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BU of 2pn4 by Molmil
Crystal Structure of Hepatitis C Virus IRES Subdomain IIa
分子名称: 5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP*AP*CP*GP*CP*C)-3', 5'-R(*GP*CP*GP*(5BU)P*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*(5BU)P*CP*CP*GP*G)-3', STRONTIUM ION
著者Zhao, Q, Han, Q, Kissinger, C.R, Thompson, P.A.
登録日2007-04-23
公開日2008-04-01
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Structure of hepatitis C virus IRES subdomain IIa.
Acta Crystallogr.,Sect.D, 64, 2008
5N12
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BU of 5n12 by Molmil
Crystal structure of TCE treated rPPEP-1
分子名称: 2,2,2-tris-chloroethanol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Pro-Pro endopeptidase, ...
著者Pichlo, C, Schacherl, M, Baumann, U.
登録日2017-02-04
公開日2018-05-30
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献Improved protein-crystal identification by using 2,2,2-trichloroethanol as a fluorescence enhancer.
Acta Crystallogr F Struct Biol Commun, 74, 2018
6FSM
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BU of 6fsm by Molmil
Crystal structure of TCE-treated Thermolysin
分子名称: CALCIUM ION, GLYCEROL, LYSINE, ...
著者Pichlo, C, Baumann, U.
登録日2018-02-19
公開日2018-05-02
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献Improved protein-crystal identification by using 2,2,2-trichloroethanol as a fluorescence enhancer.
Acta Crystallogr F Struct Biol Commun, 74, 2018
6FSJ
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BU of 6fsj by Molmil
Crystal structure of TCE-treated Lysozyme
分子名称: 1,2-ETHANEDIOL, CITRIC ACID, Lysozyme C
著者Pichlo, C, Baumann, U.
登録日2018-02-19
公開日2018-05-02
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Improved protein-crystal identification by using 2,2,2-trichloroethanol as a fluorescence enhancer.
Acta Crystallogr F Struct Biol Commun, 74, 2018
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