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6AMP
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BU of 6amp by Molmil
Crystal structure of H172A PHM (CuH absent, CuM present)
分子名称: COPPER (II) ION, Peptidyl-glycine alpha-amidating monooxygenase
著者Maheshwari, S, Rudzka, K, Gabelli, S.B, Amzel, L.M.
登録日2017-08-10
公開日2018-07-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Effects of copper occupancy on the conformational landscape of peptidylglycine alpha-hydroxylating monooxygenase.
Commun Biol, 1, 2018
6AO6
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BU of 6ao6 by Molmil
Crystal structure of H108A peptidylglycine alpha-hydroxylating monooxygenase (PHM)
分子名称: COPPER (II) ION, GLYCEROL, NICKEL (II) ION, ...
著者Maheshwari, S, Rudzka, K, Gabelli, S.B, Amzel, L.M.
登録日2017-08-15
公開日2018-07-18
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.98 Å)
主引用文献Effects of copper occupancy on the conformational landscape of peptidylglycine alpha-hydroxylating monooxygenase.
Commun Biol, 1, 2018
6AY0
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BU of 6ay0 by Molmil
Crystal structure of H108A peptidylglycine alpha-hydroxylating monooxygenase (PHM) soaked with peptide
分子名称: COPPER (II) ION, Peptidyl-glycine alpha-amidating monooxygenase
著者Maheshwari, S, Rudzka, K, Gabelli, S.B, Amzel, L.M.
登録日2017-09-07
公開日2018-07-18
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Effects of copper occupancy on the conformational landscape of peptidylglycine alpha-hydroxylating monooxygenase.
Commun Biol, 1, 2018
2DM9
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BU of 2dm9 by Molmil
Crystal Structure of PH1978 from Pyrococcus horikoshii OT3
分子名称: V-type ATP synthase subunit E
著者Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-04-20
公開日2007-01-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal Structure of PH1978 from Pyrococcus horikoshii OT3
To be Published
1WN2
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BU of 1wn2 by Molmil
Crystal structure of project ID PH1539 from Pyrococcus horikoshii OT3
分子名称: Peptidyl-tRNA hydrolase, SODIUM ION
著者Shimizu, K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-07-26
公開日2005-07-19
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structure of peptidyl-tRNA hydrolase 2 from Pyrococcus horikoshii OT3: insight into the functional role of its dimeric state.
Acta Crystallogr.,Sect.D, 64, 2008
1WP4
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BU of 1wp4 by Molmil
Structure of TT368 protein from Thermus Thermophilus HB8
分子名称: 3-hydroxyisobutyrate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SULFATE ION
著者Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-08-30
公開日2005-08-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of Novel NADP-dependent 3-Hydroxyisobutyrate Dehydrogenase from Thermus thermophilus HB8
J.Mol.Biol., 352, 2005
2DMA
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BU of 2dma by Molmil
Crystal Structure of PH1978 from Pyrococcus horikoshii OT3 (form II)
分子名称: V-type ATP synthase subunit E
著者Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-04-20
公開日2007-01-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal Structure of PH1978 from Pyrococcus horikoshii OT3 (form II)
To be Published
1V96
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BU of 1v96 by Molmil
Crystal structure of hypothetical protein of unknown function from pyrococcus horikoshii OT3
分子名称: GLYCEROL, hypothetical protein PH0500
著者Jeyakanthan, J, Tahirov, T.H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-01-21
公開日2005-02-01
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structure of PIN-domain protein PH0500 from Pyrococcus horikoshii.
Acta Crystallogr.,Sect.F, 61, 2005
7WBX
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BU of 7wbx by Molmil
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3) of the nucleosome
分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ...
著者Osumi, K, Kujirai, T, Ehara, H, Sekine, S, Takizawa, Y, Kurumizaka, H.
登録日2021-12-17
公開日2023-07-05
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome.
J.Mol.Biol., 435, 2023
7WBV
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BU of 7wbv by Molmil
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-4) of the nucleosome
分子名称: DNA (159-MER), DNA (198-MER), DNA-directed RNA polymerase subunit, ...
著者Osumi, K, Kujirai, T, Ehara, H, Sekine, S, Takizawa, Y, Kurumizaka, H.
登録日2021-12-17
公開日2023-07-05
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome.
J.Mol.Biol., 435, 2023
7WBW
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BU of 7wbw by Molmil
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3.5) of the nucleosome
分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ...
著者Osumi, K, Kujirai, T, Ehara, H, Sekine, S, Takizawa, Y, Kurumizaka, H.
登録日2021-12-17
公開日2023-07-05
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (7.1 Å)
主引用文献Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome.
J.Mol.Biol., 435, 2023
2ZR3
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BU of 2zr3 by Molmil
Crystal structure of seryl-tRNA synthetase from Pyrococcus horikoshii
分子名称: Seryl-tRNA synthetase
著者Itoh, Y, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-08-22
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.
Rna Biol., 5, 2008
7W7T
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BU of 7w7t by Molmil
The E1-BeF3- 2Ca2+ of SERCA2b
分子名称: BERYLLIUM TRIFLUORIDE ION, CALCIUM ION, MAGNESIUM ION, ...
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
2ZR2
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BU of 2zr2 by Molmil
Crystal structure of seryl-tRNA synthetase from Pyrococcus horikoshii complexed with ATP
分子名称: ADENOSINE MONOPHOSPHATE, SULFATE ION, Seryl-tRNA synthetase
著者Itoh, Y, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-08-22
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.
Rna Biol., 5, 2008
7W7V
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BU of 7w7v by Molmil
'late' E2P of SERCA2b
分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7W7U
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BU of 7w7u by Molmil
The 'Ca2+-unbound' BeF3- of SERCA2b
分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7W7W
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BU of 7w7w by Molmil
E2 Pi of SERCA2b
分子名称: MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2, TETRAFLUOROALUMINATE ION
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
1WNL
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BU of 1wnl by Molmil
Crystal Structure Of Biotin-(Acetyl-CoA-Carboxylase) ligase From Pyrococcus Horikoshii Ot3 in complex with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, biotin--[acetyl-CoA-carboxylase] ligase
著者Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-08-05
公開日2005-08-16
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structures of Biotin Protein Ligase from Pyrococcus horikoshii OT3 and its Complexes: Structural Basis of Biotin Activation
J.Mol.Biol., 353, 2005
1WQW
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BU of 1wqw by Molmil
Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 in complex with Biotinyl-5-AMP
分子名称: BIOTINYL-5-AMP, biotin--[acetyl-CoA-carboxylase] ligase
著者Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-10-04
公開日2005-10-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal Structures of Biotin Protein Ligase from Pyrococcus horikoshii OT3 and its Complexes: Structural Basis of Biotin Activation
J.Mol.Biol., 353, 2005
1WQ7
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BU of 1wq7 by Molmil
Crystal Structure Of Biotin-(Acetyl-CoA-Carboxylase) ligase From Pyrococcus Horikoshii Ot3
分子名称: biotin--[acetyl-CoA-carboxylase] ligase
著者Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-09-23
公開日2005-10-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structures of Biotin Protein Ligase from Pyrococcus horikoshii OT3 and its Complexes: Structural Basis of Biotin Activation
J.Mol.Biol., 353, 2005
1WPY
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BU of 1wpy by Molmil
Crystal Structure Of Biotin-(Acetyl-CoA-Carboxylase) ligase From Pyrococcus Horikoshii Ot3 in complex with biotin
分子名称: BIOTIN, biotin--[acetyl-CoA-carboxylase] ligase
著者Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-09-17
公開日2005-10-04
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structures of Biotin Protein Ligase from Pyrococcus horikoshii OT3 and its Complexes: Structural Basis of Biotin Activation
J.Mol.Biol., 353, 2005
2DQ0
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BU of 2dq0 by Molmil
Crystal structure of seryl-tRNA synthetase from Pyrococcus horikoshii complexed with a seryl-adenylate analog
分子名称: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, SULFATE ION, Seryl-tRNA synthetase
著者Itoh, Y, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-05-18
公開日2007-06-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.
Rna Biol., 5, 2008
2CXI
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BU of 2cxi by Molmil
Crystal Structure Of An N-terminal Fragment Of The Phenylalanyl-tRNA Synthetase Beta-Subunit From Pyrococcus Horikoshii
分子名称: Phenylalanyl-tRNA synthetase beta chain
著者Sasaki, H, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-29
公開日2006-09-19
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Structural and mutational studies of the amino acid-editing domain from archaeal/eukaryal phenylalanyl-tRNA synthetase
Proc.Natl.Acad.Sci.Usa, 103, 2006
2D5A
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BU of 2d5a by Molmil
hypothetical protein from Pyrococcus horikoshii OT3
分子名称: COENZYME A, hypothetical protein PH1109
著者Hiyama, T.B, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-10-31
公開日2006-10-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins.
J.STRUCT.FUNCT.GENOM., 7, 2006
2D59
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BU of 2d59 by Molmil
hypothetical protein from Pyrococcus horikoshii OT3
分子名称: hypothetical protein PH1109
著者Hiyama, T.B, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-10-31
公開日2006-10-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins.
J.STRUCT.FUNCT.GENOM., 7, 2006

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