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5ZPL
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Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pH 7 at 288 K (1)
分子名称: 1,2-ETHANEDIOL, COPPER (II) ION, Phenylethylamine oxidase, ...
著者Murakawa, T, Baba, S, Kawano, Y, Hayashi, H, Yano, T, Tanizawa, K, Kumasaka, T, Yamamoto, M, Okajima, T.
登録日2018-04-16
公開日2018-12-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
1AVK
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CRYSTAL STRUCTURES OF THE COPPER-CONTAINING AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS IN THE HOLO-AND APO-FORMS: IMPLICATIONS FOR THE BIOGENESIS OF TOPA QUINONE
分子名称: AMINE OXIDASE
著者Wilce, M.C.J, Guss, J.M, Freeman, H.C, Tanizawa, K, Yamaguchi, H.
登録日1997-09-16
公開日1998-03-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of the copper-containing amine oxidase from Arthrobacter globiformis in the holo and apo forms: implications for the biogenesis of topaquinone.
Biochemistry, 36, 1997
2ZOM
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BU of 2zom by Molmil
Crystal structure of CutA1 from Oryza sativa
分子名称: GLYCEROL, Protein CutA, chloroplast, ...
著者Kezuka, Y, Bagautdinov, B, Katoh, S, Ohtake, Y, Yutani, K, Nonaka, T, Katoh, E.
登録日2008-05-23
公開日2009-05-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.02 Å)
主引用文献Crystal structure of CutA1 from Oryza sativa
To be Published
1WMN
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BU of 1wmn by Molmil
Crystal structure of topaquinone-containing amine oxidase activated by cobalt ion
分子名称: COBALT (II) ION, Phenylethylamine oxidase
著者Okajima, T, Kishishita, S, Chiu, Y.C, Murakawa, T, Kim, M, Yamaguchi, H, Hirota, S, Kuroda, S, Tanizawa, K.
登録日2004-07-13
公開日2005-08-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Reinvestigation of metal ion specificity for quinone cofactor biogenesis in bacterial copper amine oxidase
Biochemistry, 44, 2005
1WMO
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Crystal structure of topaquinone-containing amine oxidase activated by nickel ion
分子名称: NICKEL (II) ION, Phenylethylamine oxidase
著者Okajima, T, Kishishita, S, Chiu, Y.C, Murakawa, T, Kim, M, Yamaguchi, H, Hirota, S, Kuroda, S, Tanizawa, K.
登録日2004-07-13
公開日2005-08-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Reinvestigation of metal ion specificity for quinone cofactor biogenesis in bacterial copper amine oxidase
Biochemistry, 44, 2005
2EO8
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BU of 2eo8 by Molmil
Crystal structure of a mutant pyrrolidone carboxyl peptidase (A199P) from P. furiosus
分子名称: Pyrrolidone-carboxylate peptidase
著者Sakamoto, K, Okazaki, N, Yutani, K.
登録日2007-03-29
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of a mutant pyrrolidone carboxyl peptidase (A199P) from P. furiosus
To be Published
1IOI
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x-ray crystalline structures of pyrrolidone carboxyl peptidase from a hyperthermophile, pyrococcus furiosus, and its cys-free mutant
分子名称: PYRROLIDONE CARBOXYL PEPTIDASE
著者Tanaka, H, Chinami, M, Ota, M, Tsukihara, T, Yutani, K.
登録日2001-03-09
公開日2001-03-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献X-ray crystalline structures of pyrrolidone carboxyl peptidase from a hyperthermophile, Pyrococcus furiosus, and its cys-free mutant.
J.Biochem., 130, 2001
1UI7
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Site-directed mutagenesis of His433 involved in binding of copper ion in Arthrobacter globiformis amine oxidase
分子名称: COPPER (II) ION, Phenylethylamine oxidase
著者Matsunami, H, Okajima, T, Hirota, S, Yamaguchi, H, Hori, H, Kuroda, S, Tanizawa, K.
登録日2003-07-15
公開日2004-04-20
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Chemical rescue of a site-specific mutant of bacterial copper amine oxidase for generation of the topa quinone cofactor
Biochemistry, 43, 2004
1UI8
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Site-directed mutagenesis of His592 involved in binding of copper ion in Arthrobacter globiformis amine oxidase
分子名称: COPPER (II) ION, Phenylethylamine oxidase
著者Matsunami, H, Okajima, T, Hirota, S, Yamaguchi, H, Hori, H, Kuroda, S, Tanizawa, K.
登録日2003-07-15
公開日2004-04-20
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Chemical rescue of a site-specific mutant of bacterial copper amine oxidase for generation of the topa quinone cofactor
Biochemistry, 43, 2004
1VC2
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BU of 1vc2 by Molmil
Crystal structure of Glyceraldehyde 3-Phosphate Dehydrogenase from Thermus thermophilus HB8
分子名称: Glyceraldehyde 3-Phosphate Dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Ishijima, J, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-04
公開日2004-03-16
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of the Glyceraldehyde 3-Phosphate Dehydrogenase from Thermus thermophilus HB8
To be Published
1V4P
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Crystal structure of Alanyl-tRNA Synthetase from Pyrococcus horikoshii OT3
分子名称: ZINC ION, alanyl-tRNA synthetase
著者Ishijima, J, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-11-14
公開日2004-11-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal structure of alanyl-tRNA synthetase editing-domain homolog (PH0574) from a hyperthermophile, Pyrococcus horikoshii OT3 at 1.45 A resolution
Proteins, 62, 2006
1VD6
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BU of 1vd6 by Molmil
Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol
分子名称: GLYCEROL, Glycerophosphoryl Diester Phosphodiesterase
著者Ishijima, J, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-18
公開日2005-04-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol
To be Published
1WXR
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BU of 1wxr by Molmil
Crystal structure of Heme Binding protein, an autotransporter hemoglobine protease from pathogenic Escherichia coli
分子名称: haemoglobin protease
著者Otto, B.R, Sijbrandi, R, Luirink, J, Oudega, B, Heddle, J.G, Mizutani, K, Park, S.-Y, Tame, J.R.H.
登録日2005-01-31
公開日2005-03-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of heme binding protein, an autotransporter hemoglobin protease from pathogenic escherichia coli
J.Biol.Chem., 280, 2005
2Z9W
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BU of 2z9w by Molmil
Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxal
分子名称: 3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE, Aspartate aminotransferase, GLYCEROL, ...
著者Yoshikane, Y, Yokochi, N, Yamasaki, M, Mizutani, K, Ohnishi, K, Mikami, B, Hayashi, H, Yagi, T.
登録日2007-09-26
公開日2007-11-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099
J.Biol.Chem., 283, 2008
2ZPH
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Complex of Fe-type nitrile hydratase with tert-butylisonitrile, photo-activated for 340min at 293K
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (III) ION, MAGNESIUM ION, ...
著者Hashimoto, K, Suzuki, H, Taniguchi, K, Noguchi, T, Yohda, M, Odaka, M.
登録日2008-07-11
公開日2008-10-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
2Z9U
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Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti at 2.0 A resolution
分子名称: Aspartate aminotransferase, GLYCEROL, SULFATE ION
著者Yoshikane, Y, Yokochi, N, Yamasaki, M, Mizutani, K, Ohnishi, K, Mikami, B, Hayashi, H, Yagi, T.
登録日2007-09-26
公開日2007-11-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099
J.Biol.Chem., 283, 2008
2ZWB
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Neutron crystal structure of wild type human lysozyme in D2O
分子名称: Lysozyme C
著者Chiba-Kamoshida, K, Matsui, T, Chatake, T, Ohhara, T, Ostermann, A, Tanaka, I, Yutani, K, Niimura, N.
登録日2008-12-02
公開日2009-12-08
最終更新日2023-11-01
実験手法NEUTRON DIFFRACTION (1.8 Å)
主引用文献Site-specific softening of peptide bonds by localized deuterium observed by neutron crystallography of human lysozyme
To be Published
2ZPI
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Complex of Fe-type nitrile hydratase with tert-butylisonitrile, photo-activated for 440min at 293K
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (III) ION, MAGNESIUM ION, ...
著者Hashimoto, K, Suzuki, H, Taniguchi, K, Noguchi, T, Yohda, M, Odaka, M.
登録日2008-07-11
公開日2008-10-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.491 Å)
主引用文献Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
2ZPB
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nitrosylated Fe-type nitrile hydratase
分子名称: FE (III) ION, MAGNESIUM ION, NITRIC OXIDE, ...
著者Hashimoto, K, Suzuki, H, Taniguchi, K, Noguchi, T, Yohda, M, Odaka, M.
登録日2008-07-09
公開日2008-10-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
2Z9X
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Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxyl-L-alanine
分子名称: 3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE, ALANINE, Aspartate aminotransferase, ...
著者Yoshikane, Y, Yokochi, N, Yamasaki, M, Mizutani, K, Ohnishi, K, Mikami, B, Hayashi, H, Yagi, T.
登録日2007-09-26
公開日2007-11-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099
J.Biol.Chem., 283, 2008
2ZPG
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Complex of Fe-type nitrile hydratase with tert-butylisonitrile, photo-activated for 120min at 293K
分子名称: FE (III) ION, MAGNESIUM ION, Nitrile hydratase subunit alpha, ...
著者Hashimoto, K, Suzuki, H, Taniguchi, K, Noguchi, T, Yohda, M, Odaka, M.
登録日2008-07-11
公開日2008-10-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
2Z9V
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Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxamine
分子名称: 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL, Aspartate aminotransferase, GLYCEROL, ...
著者Yoshikane, Y, Yokochi, N, Yamasaki, M, Mizutani, K, Ohnishi, K, Mikami, B, Hayashi, H, Yagi, T.
登録日2007-09-26
公開日2007-11-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099
J.Biol.Chem., 283, 2008
2ZPF
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Complex of Fe-type nitrile hydratase with tert-butylisonitrile, photo-activated for 18min at 293K
分子名称: FE (III) ION, MAGNESIUM ION, NITRIC OXIDE, ...
著者Hashimoto, K, Suzuki, H, Taniguchi, K, Noguchi, T, Yohda, M, Odaka, M.
登録日2008-07-11
公開日2008-10-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.482 Å)
主引用文献Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
2ZPE
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nitrosylated Fe-type nitrile hydratase with tert-butylisonitrile
分子名称: FE (III) ION, MAGNESIUM ION, NITRIC OXIDE, ...
著者Hashimoto, K, Suzuki, H, Taniguchi, K, Noguchi, T, Yohda, M, Odaka, M.
登録日2008-07-10
公開日2008-10-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
3AA9
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Crystal Structure Analysis of the Mutant CutA1 (E61V) from E. coli
分子名称: Divalent-cation tolerance protein cutA
著者Matsuura, Y, Tanaka, T, Bagautdinov, B, Kunishima, N, Yutani, K.
登録日2009-11-12
公開日2010-08-11
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Remarkable improvement in the heat stability of CutA1 from Escherichia coli by rational protein design
J.Biochem., 148, 2010

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