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3A6F
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BU of 3a6f by Molmil
W174F mutant creatininase, Type II
分子名称: CACODYLATE ION, Creatinine amidohydrolase, MANGANESE (II) ION, ...
著者Nakajima, Y, Yamashita, K, Ito, K, Yoshimoto, T.
登録日2009-08-31
公開日2010-02-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
3A6G
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BU of 3a6g by Molmil
W154F mutant creatininase
分子名称: Creatinine amidohydrolase, MANGANESE (II) ION, ZINC ION
著者Nakajima, Y, Yamashita, K, Ito, K, Yoshimoto, T.
登録日2009-08-31
公開日2010-02-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
3A6E
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BU of 3a6e by Molmil
W174F mutant creatininase, type I
分子名称: CACODYLATE ION, Creatinine amidohydrolase, MANGANESE (II) ION, ...
著者Nakajima, Y, Yamashita, K, Ito, K, Yoshimoto, T.
登録日2009-08-31
公開日2010-02-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
3A6K
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BU of 3a6k by Molmil
The E122Q mutant creatininase, Mn-Zn type
分子名称: CHLORIDE ION, Creatinine amidohydrolase, MANGANESE (II) ION, ...
著者Nakajima, Y, Yamashita, K, Ito, K, Yoshimoto, T.
登録日2009-09-02
公開日2010-02-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
1UCY
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BU of 1ucy by Molmil
THROMBIN COMPLEXED WITH FIBRINOPEPTIDE A ALPHA (RESIDUES 7-19). THREE COMPLEXES, ONE WITH EPSILON-THROMBIN AND TWO WITH ALPHA-THROMBIN
分子名称: FIBRINOPEPTIDE A-ALPHA, THROMBIN
著者Martin, P, Edwards, B.
登録日1996-08-30
公開日1997-02-12
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Bovine thrombin complexed with an uncleavable analog of residues 7-19 of fibrinogen A alpha: geometry of the catalytic triad and interactions of the P1', P2', and P3' substrate residues.
Biochemistry, 35, 1996
1UI6
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BU of 1ui6 by Molmil
Crystal structure of gamma-butyrolactone receptor (ArpA-like protein)
分子名称: A-factor receptor homolog
著者Natsume, R, Senda, T, Horinouchi, S.
登録日2003-07-15
公開日2004-07-27
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of a gamma-butyrolactone autoregulator receptor protein in Streptomyces coelicolor A3(2)
J.Mol.Biol., 336, 2004
1UI5
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BU of 1ui5 by Molmil
Crystal structure of gamma-butyrolactone receptor (ArpA like protein)
分子名称: A-factor receptor homolog
著者Natsume, R, Senda, T, Horinouchi, S.
登録日2003-07-15
公開日2004-07-27
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of a gamma-butyrolactone autoregulator receptor protein in Streptomyces coelicolor A3(2)
J.Mol.Biol., 336, 2004
3ADE
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BU of 3ade by Molmil
Crystal Structure of Keap1 in Complex with Sequestosome-1/p62
分子名称: Kelch-like ECH-associated protein 1, SULFATE ION, Sequestosome-1
著者Kurokawa, H, Yamamoto, M.
登録日2010-01-19
公開日2010-03-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The selective autophagy substrate p62 activates the stress responsive transcription factor Nrf2 through inactivation of Keap1
Nat.Cell Biol., 12, 2010
3AN3
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BU of 3an3 by Molmil
Human PPAR gamma ligand binding domain in complex with a gamma selective agonist MO3S
分子名称: (2S)-2-benzyl-3-(4-propoxy-3-{[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]phenyl}carbonyl)amino]methyl}phenyl)propanoic acid, Peroxisome proliferator-activated receptor gamma
著者Oyama, T, Ohashi, M, Waku, T, Miyachi, H, Morikawa, K.
登録日2010-08-30
公開日2011-07-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Design, Synthesis, and Structural Analysis of Phenylpropanoic Acid-Type PPAR gamma-Selective Agonists: Discovery of Reversed Stereochemistry-Activity Relationship
J.Med.Chem., 54, 2011
3AN4
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BU of 3an4 by Molmil
Human PPAR gamma ligand binding domain in complex with a gamma selective agonist MO4R
分子名称: (2R)-2-benzyl-3-(4-propoxy-3-{[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]phenyl}carbonyl)amino]methyl}phenyl)propanoic acid, Peroxisome proliferator-activated receptor gamma
著者Oyama, T, Ohashi, M, Waku, T, Miyachi, H, Morikawa, K.
登録日2010-08-30
公開日2011-07-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Design, Synthesis, and Structural Analysis of Phenylpropanoic Acid-Type PPAR gamma-Selective Agonists: Discovery of Reversed Stereochemistry-Activity Relationship
J.Med.Chem., 54, 2011
3WPW
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BU of 3wpw by Molmil
Structure of PomBc5, a periplasmic fragment of PomB from Vibrio
分子名称: ACETATE ION, PomB
著者Takao, M, Sakuma, M, Zhu, S, Homma, M, Kojima, S, Imada, K.
登録日2014-01-17
公開日2014-09-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Conformational change in the periplasmic region of the flagellar stator coupled with the assembly around the rotor
Proc. Natl. Acad. Sci. U.S.A., 111, 2014
3WPX
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BU of 3wpx by Molmil
Structure of PomBc4, a periplasmic fragment of PomB from Vibrio alginolyticus
分子名称: PomB
著者Takao, M, Sakuma, M, Zhu, S, Homma, M, Kojima, S, Imada, K.
登録日2014-01-17
公開日2014-09-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Conformational change in the periplasmic region of the flagellar stator coupled with the assembly around the rotor
Proc. Natl. Acad. Sci. U.S.A., 111, 2014
7VKF
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BU of 7vkf by Molmil
Reduced enzyme of FAD-dpendent Glucose Dehydrogenase complex with D-glucono-1,5-lactone at pH8.5
分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, D-glucono-1,5-lactone, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, ...
著者Nakajima, Y, Nishiya, Y, Ito, K.
登録日2021-09-29
公開日2022-10-05
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Conformational change of catalytic residue in reduced enzyme of FAD-dependent Glucose Dehydrogenase at pH6.5
To Be Published
7VKD
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BU of 7vkd by Molmil
Reduced enzyme of FAD-dpendent Glucose Dehydrogenase at pH6.5
分子名称: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, GMC oxidoreductase
著者Nakajima, Y, Nishiya, Y, Ito, K.
登録日2021-09-29
公開日2022-10-05
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Conformational change of catalytic residue in reduced enzyme of FAD-dependent Glucose Dehydrogenase at pH6.5
To Be Published
2DCE
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BU of 2dce by Molmil
Solution structure of the SWIRM domain of human KIAA1915 protein
分子名称: KIAA1915 protein
著者Yoneyama, M, Tochio, N, Umehara, T, Koshiba, S, Inoue, M, Tanaka, A, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-01-06
公開日2006-07-06
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural and Functional Differences of SWIRM Domain Subtypes
J.Mol.Biol., 369, 2007
2CU7
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BU of 2cu7 by Molmil
Solution structure of the SANT domain of human KIAA1915 protein
分子名称: KIAA1915 protein
著者Yoneyama, M, Umehara, T, Saito, K, Tochio, N, Koshiba, S, Inoue, M, Tanaka, A, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-25
公開日2005-11-25
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural and Functional Differences of SWIRM Domain Subtypes
J.Mol.Biol., 369, 2007
2CUJ
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BU of 2cuj by Molmil
Solution structure of SWIRM domain of mouse transcriptional adaptor 2-like
分子名称: transcriptional adaptor 2-like
著者Yoneyama, M, Umehara, T, Sato, M, Tochio, N, Koshiba, S, Inoue, M, Tanaka, A, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-26
公開日2005-11-26
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural and Functional Differences of SWIRM Domain Subtypes
J.Mol.Biol., 369, 2007
1MKX
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BU of 1mkx by Molmil
THE CO-CRYSTAL STRUCTURE OF UNLIGANDED BOVINE ALPHA-THROMBIN AND PRETHROMBIN-2: MOVEMENT OF THE YPPW SEGMENT AND ACTIVE SITE RESIDUES UPON LIGAND BINDING
分子名称: ALPHA-THROMBIN, PRETHROMBIN-2
著者Malkowski, M.G, Edwards, B.F.P.
登録日1997-03-13
公開日1997-07-07
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The co-crystal structure of unliganded bovine alpha-thrombin and prethrombin-2: movement of the Tyr-Pro-Pro-Trp segment and active site residues upon ligand binding.
Protein Sci., 6, 1997
2DDH
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BU of 2ddh by Molmil
Crystal Structure of Acyl-CoA oxidase complexed with 3-OH-dodecanoate
分子名称: (3R)-3-HYDROXYDODECANOIC ACID, Acyl-CoA oxidase, FLAVIN-ADENINE DINUCLEOTIDE
著者Keiji, T, Nakajima, Y, Miyahara, I, Hirotsu, K.
登録日2006-01-29
公開日2006-03-28
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Three-Dimensional Structure of Rat-Liver Acyl-CoA Oxidase in Complex with a Fatty Acid: Insights into Substrate-Recognition and Reactivity toward Molecular Oxygen.
J.Biochem.(Tokyo), 139, 2006
1YCP
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BU of 1ycp by Molmil
THE CRYSTAL STRUCTURE OF FIBRINOGEN-AA PEPTIDE 1-23 (F8Y) BOUND TO BOVINE THROMBIN EXPLAINS WHY THE MUTATION OF PHE-8 TO TYROSINE STRONGLY INHIBITS NORMAL CLEAVAGE AT ARGININE-16
分子名称: ALPHA THROMBIN, EPSILON THROMBIN, FIBRINOPEPTIDE A-ALPHA
著者Malkowski, M.G, Edwards, B.F.P.
登録日1997-05-01
公開日1998-05-06
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of fibrinogen-Aalpha peptide 1-23 (F8Y) bound to bovine thrombin explains why the mutation of Phe-8 to tyrosine strongly inhibits normal cleavage at Arg-16.
Biochem.J., 326, 1997
2D7T
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BU of 2d7t by Molmil
Crystal structure of human anti polyhydroxybutyrate antibody Fv
分子名称: anti polyhydroxybutyrate antibody Fv, heavy chain, light chain
著者Watanabe, H.
登録日2005-11-29
公開日2006-12-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A human antibody fragment with high affinity for the biodegradable polymer film
To be Published
5XRZ
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BU of 5xrz by Molmil
Structure of a ssDNA bound to the inner DNA binding site of RAD52
分子名称: DNA repair protein RAD52 homolog, POTASSIUM ION, ssDNA (40-MER)
著者Saotome, M, Saito, K, Yasuda, T, Sugiyama, S, Kurumizaka, H, Kagawa, W.
登録日2017-06-11
公開日2018-04-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural Basis of Homology-Directed DNA Repair Mediated by RAD52
iScience, 3, 2018
5XQV
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BU of 5xqv by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein A20L mutant (NFE6, AFP), P21 form
分子名称: Ice-structuring protein
著者Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
登録日2017-06-07
公開日2018-05-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (0.97 Å)
主引用文献Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XR0
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BU of 5xr0 by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein A20T mutant (NFE6, AFP), P21 form
分子名称: Ice-structuring protein
著者Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
登録日2017-06-07
公開日2018-05-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3A1R
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BU of 3a1r by Molmil
Neutron crystal structure analysis of bovine pancreatic ribonuclease A
分子名称: Ribonuclease pancreatic
著者Yagi, D, Tanaka, I, Niimura, N.
登録日2009-04-21
公開日2009-09-01
最終更新日2023-11-01
実験手法NEUTRON DIFFRACTION (1.7 Å)
主引用文献A neutron crystallographic analysis of phosphate-free ribonuclease A at 1.7 A resolution
Acta Crystallogr.,Sect.D, 65, 2009

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