3WK2
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3WMP
| Crystal structure of SLL-2 | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Kita, A, Jimbo, M, Sakai, R, Morimoto, Y, Miki, K. | 登録日 | 2013-11-22 | 公開日 | 2015-01-14 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of a symbiosis-related lectin from octocoral. Glycobiology, 25, 2015
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2ZS1
| Structural Basis for the Heterotropic and Homotropic Interactions of Invertebrate Giant Hemoglobin | 分子名称: | CHLORIDE ION, Extracellular giant hemoglobin major globin subunit A1, Extracellular giant hemoglobin major globin subunit A2, ... | 著者 | Numoto, N, Nakagawa, T, Kita, A, Sasayama, Y, Fukumori, Y, Miki, K. | 登録日 | 2008-09-02 | 公開日 | 2008-10-21 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Structural Basis for the Heterotropic and Homotropic Interactions of Invertebrate Giant Hemoglobin Biochemistry, 47, 2008
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3WJW
| Wild-type orotidine 5'-monophosphate decarboxylase from M. thermoautotrophicus complexed with 6-methyl-UMP | 分子名称: | 6-methyluridine 5'-(dihydrogen phosphate), Orotidine 5'-phosphate decarboxylase | 著者 | Fujihashi, M, Kuroda, S, Pai, E.F, Miki, K. | 登録日 | 2013-10-17 | 公開日 | 2013-12-04 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.59 Å) | 主引用文献 | Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase. J.Am.Chem.Soc., 135, 2013
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3AQB
| M. luteus B-P 26 heterodimeric hexaprenyl diphosphate synthase in complex with magnesium | 分子名称: | CHLORIDE ION, Component A of hexaprenyl diphosphate synthase, Component B of hexaprenyl diphosphate synthase, ... | 著者 | Sasaki, D, Fujihashi, M, Okuyama, N, Kobayashi, Y, Noike, M, Koyama, T, Miki, K. | 登録日 | 2010-10-28 | 公開日 | 2010-11-10 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Crystal structure of heterodimeric hexaprenyl diphosphate synthase from Micrococcus luteus B-P 26 reveals that the small subunit is directly involved in the product chain length regulation. J.Biol.Chem., 286, 2011
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3WJX
| Wild-type orotidine 5'-monophosphate decarboxylase from M. thermoautotrophicus complexed with 6-amino-UMP | 分子名称: | 6-AMINOURIDINE 5'-MONOPHOSPHATE, GLYCEROL, Orotidine 5'-phosphate decarboxylase | 著者 | Fujihashi, M, Kuroda, S, Pai, E.F, Miki, K. | 登録日 | 2013-10-17 | 公開日 | 2013-12-04 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.23 Å) | 主引用文献 | Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase. J.Am.Chem.Soc., 135, 2013
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2ZQM
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3WK3
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3WDL
| Crystal structure of 4-phosphopantoate-beta-alanine ligase complexed with ATP | 分子名称: | 4-phosphopantoate--beta-alanine ligase, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION | 著者 | Kishimoto, A, Kita, A, Ishibashi, T, Tomita, H, Yokooji, Y, Imanaka, T, Atomi, H, Miki, K. | 登録日 | 2013-06-19 | 公開日 | 2014-04-02 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Crystal structure of phosphopantothenate synthetase from Thermococcus kodakarensis Proteins, 82, 2014
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3A9C
| Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1 in complex with ribulose-1,5-bisphosphate | 分子名称: | DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, RIBULOSE-1,5-DIPHOSPHATE, ... | 著者 | Nakamura, A, Fujihashi, M, Nishiba, Y, Yoshida, S, Yano, A, Atomi, H, Imanaka, T, Miki, K. | 登録日 | 2009-10-22 | 公開日 | 2010-11-03 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 J.Biol.Chem., 287, 2012
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3WJQ
| Crystal structure of the HypE CN form | 分子名称: | ADENOSINE-5'-TRIPHOSPHATE, BENZAMIDINE, DI(HYDROXYETHYL)ETHER, ... | 著者 | Tominaga, T, Watanabe, S, Miki, K. | 登録日 | 2013-10-14 | 公開日 | 2013-12-18 | 最終更新日 | 2023-12-06 | 実験手法 | X-RAY DIFFRACTION (1.645 Å) | 主引用文献 | Crystal structures of the carbamoylated and cyanated forms of HypE for [NiFe] hydrogenase maturation Proc.Natl.Acad.Sci.USA, 110, 2013
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3WK0
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3ABF
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3ATQ
| Geranylgeranyl Reductase (GGR) from Sulfolobus acidocaldarius | 分子名称: | Conserved Archaeal protein, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, TETRADECANE | 著者 | Sasaki, D, Fujihashi, M, Murakami, M, Yoshimura, T, Hemmi, H, Miki, K. | 登録日 | 2011-01-12 | 公開日 | 2011-05-04 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Structure and mutation analysis of archaeal geranylgeranyl reductase J.Mol.Biol., 409, 2011
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3ATR
| Geranylgeranyl Reductase (GGR) from Sulfolobus acidocaldarius co-crystallized with its ligand | 分子名称: | Conserved Archaeal protein, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, PYROPHOSPHATE, ... | 著者 | Fujihashi, M, Sasaki, D, Iwata, Y, Yoshimura, T, Hemmi, H, Miki, K. | 登録日 | 2011-01-12 | 公開日 | 2011-05-04 | 最終更新日 | 2013-12-25 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Structure and mutation analysis of archaeal geranylgeranyl reductase J.Mol.Biol., 409, 2011
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3AQC
| M. luteus B-P 26 heterodimeric hexaprenyl diphosphate synthase in complex with magnesium and FPP analogue | 分子名称: | (2E,6E)-7,11-dimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate, CHLORIDE ION, Component A of hexaprenyl diphosphate synthase, ... | 著者 | Sasaki, D, Fujihashi, M, Okuyama, N, Kobayashi, Y, Noike, M, Koyama, T, Miki, K. | 登録日 | 2010-10-28 | 公開日 | 2010-11-10 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.61 Å) | 主引用文献 | Crystal structure of heterodimeric hexaprenyl diphosphate synthase from Micrococcus luteus B-P 26 reveals that the small subunit is directly involved in the product chain length regulation. J.Biol.Chem., 286, 2011
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3A44
| Crystal structure of HypA in the dimeric form | 分子名称: | Hydrogenase nickel incorporation protein hypA, ZINC ION | 著者 | Watanabe, S, Arai, T, Matsumi, R, Atomi, H, Imanaka, T, Miki, K. | 登録日 | 2009-06-30 | 公開日 | 2009-10-06 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (3.31 Å) | 主引用文献 | Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation. J.Mol.Biol., 394, 2009
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2Z1E
| Crystal structure of HypE from Thermococcus kodakaraensis (outward form) | 分子名称: | Hydrogenase expression/formation protein HypE | 著者 | Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K. | 登録日 | 2007-05-08 | 公開日 | 2007-07-17 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling Mol.Cell, 27, 2007
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2Z1C
| Crystal structure of HypC from Thermococcus kodakaraensis KOD1 | 分子名称: | GLYCEROL, Hydrogenase expression/formation protein HypC, TETRAETHYLENE GLYCOL | 著者 | Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K. | 登録日 | 2007-05-08 | 公開日 | 2007-07-17 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling Mol.Cell, 27, 2007
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3WJY
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3WMQ
| Crystal structure of the complex between SLL-2 and GalNAc. | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Kita, A, Jimbo, M, Sakai, R, Morimoto, Y, Miki, K. | 登録日 | 2013-11-22 | 公開日 | 2015-01-14 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Crystal structure of a symbiosis-related lectin from octocoral. Glycobiology, 25, 2015
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2ZSK
| Crystal structure of PH1733, an aspartate racemase homologue, from Pyrococcus horikoshii OT3 | 分子名称: | 226aa long hypothetical aspartate racemase | 著者 | Kita, A, Tasaki, S, Yohda, M, Miki, K. | 登録日 | 2008-09-12 | 公開日 | 2008-10-21 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.55 Å) | 主引用文献 | Crystal structure of PH1733, an aspartate racemase homologue, from pyrococcus horikoshii OT3 Proteins, 74, 2009
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2Z1F
| Crystal structure of HypE from Thermococcus kodakaraensis (inward form) | 分子名称: | Hydrogenase expression/formation protein HypE | 著者 | Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K. | 登録日 | 2007-05-08 | 公開日 | 2007-07-17 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling Mol.Cell, 27, 2007
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2Z1D
| Crystal structure of [NiFe] hydrogenase maturation protein, HypD from Thermococcus kodakaraensis | 分子名称: | Hydrogenase expression/formation protein hypD, IRON/SULFUR CLUSTER | 著者 | Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K. | 登録日 | 2007-05-08 | 公開日 | 2007-07-17 | 最終更新日 | 2014-11-12 | 実験手法 | X-RAY DIFFRACTION (2.07 Å) | 主引用文献 | Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling Mol.Cell, 27, 2007
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2ZS0
| Structural Basis for the Heterotropic and Homotropic Interactions of Invertebrate Giant Hemoglobin | 分子名称: | CALCIUM ION, CHLORIDE ION, Extracellular giant hemoglobin major globin subunit A1, ... | 著者 | Numoto, N, Nakagawa, T, Kita, A, Sasayama, Y, Fukumori, Y, Miki, K. | 登録日 | 2008-09-02 | 公開日 | 2008-10-21 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Structural Basis for the Heterotropic and Homotropic Interactions of Invertebrate Giant Hemoglobin Biochemistry, 47, 2008
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