9JWW

T200H Carbonic Anhydrase II pH 7.8 20 atm CO2

Summary for 9JWW

• Entry DOI: 10.2210/pdb9jww/pdb
• Related: 9JWE 9JWM 9JWU
• Descriptor: Carbonic anhydrase 2, ZINC ION, CARBON DIOXIDE, ... (4 entities in total)
• Functional Keywords: lyase, metal binding protein
• Biological source: Homo sapiens (human)
• Total number of polymer chains: 1
• Total formula weight: 30308.41

Authors

Lim, S.W.,Kim, C.U. (deposition date: 2024-10-10, release date: 2025-07-16)

Primary citation

Lim, S.W.,Jeong, H.,Kim, G.H.,Min, D.,Kim, J.K.,Kim, C.U.
Conformational flexibility of His200 enables catalytic activity in the T200H mutant of carbonic anhydrase II.
Mol.Cells, 48:100226-100226, 2025

PubMed Abstract: Carbonic anhydrase II (CAII) is one of the most efficient enzymes known, catalyzing the reversible hydration of CO to regulate pH and facilitate CO transport in biological systems. Its exceptional catalytic rate depends on a highly ordered active site composed of a Zn ion and a hydrogen-bonded water network that supports substrate binding, proton transfer, and product release. Among the residues maintaining this network, Thr200 plays a crucial role by stabilizing key water molecules. To investigate the structural and functional consequences of perturbing this network, we examined the T200H mutant of CAII using high-pressure cryocooling and X-ray crystallography under CO pressures of 0, 5, and 20 atm. The crystallographic snapshots captured the resting (T200H-0atm), substrate-bound (T200H-20atm), and product-bound (T200H-5atm) states of the T200H mutant. In the resting state, His200 disrupts the active site by displacing essential water molecules (W1 and W2), thereby impairing the proton transfer pathway. However, the substrate- and product-bound states reveal that His200 exhibits conformational flexibility, allowing partial restoration of the water network required for catalysis. These findings suggest that His200 functions as a dynamic gatekeeper, modulating access of water, substrate, and product to the active site. This structural plasticity explains how the T200H mutant retains partial catalytic activity despite a mutation that would otherwise severely hinder function. Our results provide new insights into active-site dynamics in CAII and offer a foundation for designing isoform-specific inhibitors or engineered carbonic anhydrase variants with tunable catalytic properties.

PubMed: 40441537
DOI: 10.1016/j.mocell.2025.100226

Experimental method

X-RAY DIFFRACTION (1.251 Å)