9JUT

X-ray crystal structure of Y16524 in EP300

This is a non-PDB format compatible entry.

Summary for 9JUT

• Entry DOI: 10.2210/pdb9jut/pdb
• Descriptor: Histone acetyltransferase p300, (6~{S})-1-(3-chloranyl-4-methoxy-phenyl)-6-[4-(3-methyl-1,2-benzoxazol-5-yl)-1-[(2~{S})-2-morpholin-4-ylpropyl]imidazol-2-yl]piperidin-2-one (3 entities in total)
• Functional Keywords: ep300, bromodomain, protein binding
• Biological source: Homo sapiens (human)
• Total number of polymer chains: 1
• Total formula weight: 17272.12

Authors

Hu, J.,Zhang, C.,Luo, G.,Tang, X.,Wu, T.,Shen, H.,Zhao, X.,Wu, X.,Smaill, J.,Zhang, Y.,Xu, Y.,Xiang, Q. (deposition date: 2024-10-08, release date: 2025-03-12)

Primary citation

Hu, J.K.,Tang, X.,Luo, G.L.,Zhang, C.,Wu, T.B.,Wang, C.,Shen, H.,Zhao, X.F.,Wu, X.S.,Smaill, J.B.,Xu, Y.,Zhang, Y.,Xiang, Q.P.
Discovery of 5-imidazole-3-methylbenz[d]isoxazole derivatives as potent and selective CBP/p300 bromodomain inhibitors for the treatment of acute myeloid leukemia.
Acta Pharmacol.Sin., 2025

PubMed Abstract: Inhibition of the bromodomain of the cAMP response element binding protein (CREB)-binding protein (CBP) and its homologue p300 is an attractive therapeutic approach in oncology, particularly in acute myeloid leukemia (AML). In this study we describe the design, optimization, and evaluation of 5-imidazole-3-methylbenz[d]isoxazoles as novel, potent and selective CBP/p300 bromodomain inhibitors. Two of the representative compounds, 16t (Y16524) and 16u (Y16526), bound to the p300 bromodomain with IC values of 0.01 and 0.03 μM, respectively. Furthermore, 16t and 16u potently inhibited the growth of AML cell lines, particularly MV4;11 cells with IC values of 0.49 and 0.26 μM, respectively. The potent CBP/p300 bromodomain inhibitors represent a new class of compounds for the development of potential therapeutics against AML.

PubMed: 39890943
DOI: 10.1038/s41401-025-01478-x

Experimental method

X-RAY DIFFRACTION (2.13 Å)