9IT0

Liganded-state E.coli PatZ

Summary for 9IT0

• Entry DOI: 10.2210/pdb9it0/pdb
• EMDB information: 60853
• Descriptor: Protein acetyltransferase, ACETYL COENZYME *A, PHOSPHATE ION, ... (4 entities in total)
• Functional Keywords: acetyltransferase, transferase
• Biological source: Escherichia coli BL21(DE3)
• Total number of polymer chains: 4
• Total formula weight: 399253.95

Authors

Park, J.B.,Roh, S.H. (deposition date: 2024-07-19, release date: 2025-06-04, Last modification date: 2025-06-25)

Primary citation

Park, J.B.,Lee, G.,Han, Y.Y.,Kim, D.,Heo, K.,Kim, J.,Park, J.,Yun, H.,Lee, C.W.,Cho, H.S.,Kim, J.S.,Steinegger, M.,Seok, Y.J.,Roh, S.H.
Structural basis of the catalytic and allosteric mechanism of bacterial acetyltransferase PatZ.
Proc.Natl.Acad.Sci.USA, 122:e2419096122-e2419096122, 2025

PubMed Abstract: GCN5-related -acetyltransferases (GNATs) are essential for regulating bacterial metabolism by acetylating specific target proteins. Despite their importance in bacterial physiology, the mechanisms behind their enzymatic and regulatory functions remain poorly understood. In this study, we investigated the structures of protein acetyltransferase Z (PatZ), a Type I GNAT, and examined its ligand interactions, catalytic mechanism, and allosteric regulation. PatZ functions as a homotetramer, with each subunit comprising a catalytic and a regulatory domain. Our results demonstrate that the regulatory domain is vital for acetyltransferase activity, as it triggers cooperative conformational changes in the catalytic domain and directly aids in the formation of substrate-binding pockets. Additionally, a protein structure-based evolutionary analysis of bacterial GNAT types revealed a distinct regulatory domain pattern across phyla, highlighting its crucial role in responding to cellular energy levels.

PubMed: 40498448
DOI: 10.1073/pnas.2419096122

Experimental method

ELECTRON MICROSCOPY (1.99 Å)