9IB6
Apo form of Tumor necrosis factor-like lectin PLTL from Photorhabdus laumondii
Summary for 9IB6
| Entry DOI | 10.2210/pdb9ib6/pdb |
| Descriptor | Photorhabdus luminescens subsp. laumondii TTO1 complete genome segment 15/17, SODIUM ION (3 entities in total) |
| Functional Keywords | lectin, tnf-like, photorhabdus laumondii, pltl, fucose-binding, sugar binding protein |
| Biological source | Photorhabdus laumondii subsp. laumondii TTO1 |
| Total number of polymer chains | 1 |
| Total formula weight | 14974.74 |
| Authors | |
| Primary citation | Melicher, F.,Dobes, P.,Komarek, J.,Faltinek, L.,Korsak, M.,Sykorova, P.,Houser, J.,Wimmerova, M. Structural and functional characterization of the newly identified Photorhabdus laumondii tumor necrosis factor-like lectin. Febs J., 2025 Cited by PubMed Abstract: Photorhabdus bacteria live in mutualistic relationships with Heterorhabditis nematodes, and together, they act as effective insect pathogens. These bacteria produce a diverse array of lectins, sugar-binding proteins that are believed to play crucial roles in the complex tripartite interaction among Photorhabdus, nematodes, and their insect hosts. One such lectin, Photorhabdus laumondii tumor necrosis factor (TNF)-like lectin (PLTL), identified in Photorhabdus laumondii subsp. laumondii TTO1, exhibits notable sequence similarity to the N-terminal domain of the BC2L-C lectin (BC2L-CN), a TNF-like lectin recognized for its specificity toward fucosylated glycans associated with human embryonic stem cells and certain cancers. Through glycan array analysis and surface plasmon resonance, we identified PLTL's binding preference for branched histo-blood group oligosaccharides. The crystallographic structure of PLTL in complex with the BLe pentasaccharide reveals a network of direct and water-mediated hydrogen bonds simultaneously stabilizing the Fucα1-2 and Galα1-3 moieties, which define its narrow glycan specificity. A combination of mass spectrometry, protein crystallography, and analytical ultracentrifugation showed a unique hexameric PLTL architecture stabilized by intermolecular disulfide bridges. Our data suggest that PLTL may contribute to the mutualistic relationship between Photorhabdus and its nematode symbiont, Heterorhabditis bacteriophora, rather than playing a role in the interaction with the insect host. This study provides a structural and functional characterization of PLTL, a newly identified member of the TNF-like lectin family. Comparative analysis with BC2L-CN highlights both conserved and distinct structural features, suggesting potential applications in glycan recognition-based diagnostics or biotechnological tools beyond its biological role. Our findings underscore its complex glycan specificity and offer insights into its potential role in Photorhabdus-nematode symbiosis. PubMed: 41105922DOI: 10.1111/febs.70293 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (1.2 Å) |
Structure validation
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