9F7W
Humman PPARgamma ligand binding domain in complex with co-activator 1alpha peptide and bisphenol A (BPA)
Summary for 9F7W
| Entry DOI | 10.2210/pdb9f7w/pdb |
| Descriptor | Peroxisome proliferator-activated receptor gamma, Peroxisome proliferator-activated receptor gamma coactivator 1-alpha, 4,4'-PROPANE-2,2-DIYLDIPHENOL, ... (4 entities in total) |
| Functional Keywords | peroxisome proliferator-activated receptor gamma, bisphenol a, nuclear protein, transcription |
| Biological source | Homo sapiens (human) More |
| Total number of polymer chains | 2 |
| Total formula weight | 34936.53 |
| Authors | |
| Primary citation | Useini, A.,Schwerin, I.K.,Kunze, G.,Strater, N. Structural Studies on the Binding Mode of Bisphenols to PPAR gamma. Biomolecules, 14:-, 2024 Cited by PubMed Abstract: Bisphenol A (BPA) and bisphenol B (BPB) are widely used in the production of plastics, and their potential adverse health effects, particularly on endocrine disruption and metabolic health, have raised concern. Peroxisome proliferator-activated receptor gamma (PPARγ) plays a pivotal role in metabolic regulation and adipogenesis, making it a target of interest in understanding the development of obesity and associated health impacts. In this study, we employ X-ray crystallography and molecular dynamics (MD) simulations to study the interaction of PPARγ with BPA and BPB. Crystallographic structures reveal the binding of BPA and BPB to the ligand binding domain of PPARγ, next to C285, where binding of partial agonists as well as antagonists and inverse agonists of PPARγ signaling has been previously observed. However, no interaction of BPA and BPB with Y437 in the activation function 2 site is observed, showing that these ligands cannot stabilize the active conformation of helix 12 directly. Furthermore, free energy analyses of the MD simulations revealed that I341 has a large energetic contribution to the BPA and BPB binding modes characterized in this study. PubMed: 38927044DOI: 10.3390/biom14060640 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (1.25 Å) |
Structure validation
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