9DD9

Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E

これはPDB形式変換不可エントリーです。

9DD9 の概要

• エントリーDOI: 10.2210/pdb9dd9/pdb
• EMDBエントリー: 46761
• 分子名称: Glycoprotein B, D48 heavy chain, D48 light chain, ... (6 entities in total)
• 機能のキーワード: immune complex, neutralization, herpes fusogen, viral protein
• 由来する生物種: Human alphaherpesvirus 1 (Herpes simplex virus type 1); 詳細
• タンパク質・核酸の鎖数: 9
• 化学式量合計: 353185.73

構造登録者

Roark, R.S.,Shapiro, L.S.,Kwong, P.D. (登録日: 2024-08-27, 公開日: 2025-09-10, 最終更新日: 2025-12-31)

主引用文献

Roark, R.S.,Schaub, A.J.,Shi, W.,Wang, M.,Bahna, F.A.,Becker, J.E.,Biju, A.,Chong, S.,Du, H.,Guo, Y.,Hong, H.,Katsamba, P.S.,Mannepalli, S.M.,Olia, A.S.,Ou, L.,Rubin, S.K.,Sabo, Y.,Suleiman, M.,Wells, M.L.,Zhang, B.,Cheng, C.,Glasgow, A.,Ho, D.D.,Huang, Y.,Pierson, T.C.,Rawi, R.,Zhou, T.,Shapiro, L.,Kwong, P.D.
Prefusion structure, evasion and neutralization of HSV-1 glycoprotein B.
Nat Microbiol, 10:2966-2980, 2025

PubMed Abstract: Glycoprotein B (gB) refolds between prefusion and postfusion conformations to facilitate herpesvirus entry into host cells. However, the isolation of prefusion-specific neutralizing antibodies, effective against other viral entry machines, has been challenging. Here we describe stabilization of the prefusion gB ectodomain from herpes simplex virus 1 (HSV-1), determine ectodomain structures at 2.9- to 4.1-Å resolution using cryogenic electron microscopy (cryo-EM) and isolate a prefusion-specific gB-neutralizing antibody termed WS.HSV-1.24. Murine immunization with gB stabilized in the prefusion conformation induced high titres of antibodies binding to both prefusion and postfusion gB, but-most notably-without measurable serum neutralization. Accessibility analysis revealed iso-surface exposure, with accessible surfaces on prefusion HSV-1 gB also exposed on postfusion gB. Structural analysis suggested substantial plasticity, with regions that refolded between pre- and postfusion conformations relegated to domain interfaces with limited accessibility; indeed, WS.HSV-1.24 recognized a domain-interface refolding region to facilitate neutralization. We propose that prefusion HSV-1 gB evades neutralization by most antibodies through an iso-surface display that is coupled to structural plasticity.

PubMed: 41174178
DOI: 10.1038/s41564-025-02153-x

実験手法

ELECTRON MICROSCOPY (3.77 Å)