9DAX

The structure of AlphaIIbbeta3 in apo state

9DAX の概要

• エントリーDOI: 10.2210/pdb9dax/pdb
• 関連するPDBエントリー: 9DAO
• EMDBエントリー: 46695 46701
• 分子名称: Integrin alpha-IIb, Integrin beta-3, CALCIUM ION, ... (5 entities in total)
• 機能のキーワード: alphaiibbeta3 integrin, platelet aggregation, clot retraction, blood clotting
• 由来する生物種: Homo sapiens (human); 詳細
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 194849.66

構造登録者

Walz, T.,Coller, B.S.,Wang, J.L.,Buitrago, L.,Wang, L.,Li, J.H. (登録日: 2024-08-22, 公開日: 2025-04-09, 最終更新日: 2025-07-23)

主引用文献

Wang, J.,Buitrago, L.,Wang, L.,Li, J.,Walz, T.,Coller, B.S.
An alpha IIb beta 3 ligand-mimetic murine monoclonal antibody that produces platelet activation by engaging the Fc gamma IIa receptor.
Blood Adv, 9:3518-3529, 2025

PubMed Abstract: To produce a murine monoclonal antibody (mAb) that binds to glycoprotein IIb/IIIa (αIIbβ3) and inhibits clot retraction (CR), we immunized mice with human platelets and tested hybridoma supernatants for their ability to bind to αIIbβ3 and inhibit CR. The immunoglobulin G1 (IgG1) mAb R6H8 completely inhibited CR at 20 μg/mL. Paradoxically, at 5 μg/mL, R6H8 initiated platelet aggregation and induced P-selectin expression, fibrinogen binding, and PAC-1 binding. At 20 μg/mL, however, R6H8 completely inhibited aggregation induced by thrombin PAR-1 receptor activating peptide SFLLRN (T6; 25 μg/mL) and T6-induced fibrinogen and PAC-1 binding to platelets. Platelet aggregation induced by R6H8 was inhibited by mAb IV.3, which blocks the FcγIIa receptor (FcγRIIa), and the Fab fragment of R6H8 did not induce platelet aggregation, suggesting that R6H8 binds to both αIIbβ3 and FcγRIIa. Cryogenic electron microscopy analysis of the R6H8 Fab-αIIbβ3 complex revealed that R6H8 (1) binds to the αIIbβ3 RGD binding pocket via an Arg-Tyr-Asp (RYD) sequence in its heavy chain complementarity-determining region 3; (2) interacts with β3 Asp126, producing a reorientation of Asp126 and loss of the adjacent to metal ion-dependent adhesion site Ca2+; and (3) initiates swing-out of the β3 hybrid domain. We conclude that R6H8 is an αIIbβ3 ligand-mimetic mAb that activates platelets via FcγRIIa at low concentrations and potently inhibits platelet aggregation and CR at high concentrations. R6H8 simulates the actions of a number of pathological antibodies, including platelet-activating antibodies developed after therapy with αIIbβ3 inhibitors and platelet-activating antibodies in heparin-induced thrombocytopenia and vaccine-induced immune thrombotic thrombocytopenia. As such, it may be a valuable reagent for better understanding these disorders and identifying potential therapies.

PubMed: 40101235
DOI: 10.1182/bloodadvances.2024015368

実験手法

ELECTRON MICROSCOPY (3.3 Å)