9C88

Cryo-EM Structure of a Proteolytic ClpXP AAA+ Machine Translocating a Portion of a Branched-Degron DHFR Substrate

9C88 の概要

• エントリーDOI: 10.2210/pdb9c88/pdb
• EMDBエントリー: 45300
• 分子名称: Branched-Degron DHFR, ATP-dependent Clp protease ATP-binding subunit ClpX, ATP-dependent Clp protease proteolytic subunit, ... (6 entities in total)
• 機能のキーワード: clpxp, full-engaged state, aaa protease, chaperone
• 由来する生物種: Escherichia coli; 詳細
• タンパク質・核酸の鎖数: 21
• 化学式量合計: 586468.47

構造登録者

Ghanbarpour, A.,Sauer, R.T.,Davis, J.H. (登録日: 2024-06-12, 公開日: 2024-10-16, 最終更新日: 2025-04-30)

主引用文献

Ghanbarpour, A.,Sauer, R.T.,Davis, J.H.
A proteolytic AAA+ machine poised to unfold protein substrates.
Nat Commun, 15:9681-9681, 2024

PubMed Abstract: AAA+ proteolytic machines unfold proteins before degrading them. Here, we present cryoEM structures of ClpXP-substrate complexes that reveal a postulated but heretofore unseen intermediate in substrate unfolding/degradation. A ClpX hexamer draws natively folded substrates tightly against its axial channel via interactions with a fused C-terminal degron tail and ClpX-RKH loops that flexibly conform to the globular substrate. The specific ClpX-substrate contacts observed vary depending on the substrate degron and affinity tags, helping to explain ClpXP's ability to unfold/degrade a wide array of different cellular substrates. Some ClpX contacts with native substrates are enabled by upward movement of the seam subunit in the AAA+ spiral, a motion coupled to a rearrangement of contacts between the ClpX unfoldase and ClpP peptidase. Our structures additionally highlight ClpX's ability to translocate a diverse array of substrate topologies, including the co-translocation of two polypeptide chains.

PubMed: 39516482
DOI: 10.1038/s41467-024-53681-9

実験手法

ELECTRON MICROSCOPY (2.6 Å)