8YBZ

State - II: Spike 3-up RBD with THSC20.HVTR26 (Fab26)

8YBZ の概要

• エントリーDOI: 10.2210/pdb8ybz/pdb
• EMDBエントリー: 34603
• 分子名称: Spike glycoprotein, THSC20.HVTR26 (Fab26) - Heavy Chain, THSC20.HVTR26 (Fab26) - Light Chain (3 entities in total)
• 機能のキーワード: cryo-em analysis, spike protein, monoclonal antibody, protein binding
• 由来する生物種: Severe acute respiratory syndrome coronavirus; 詳細
• タンパク質・核酸の鎖数: 9
• 化学式量合計: 565148.28

構造登録者

Rencilin, C.F.,Bhattacharya, J.,Dutta, S. (登録日: 2024-02-16, 公開日: 2025-02-19, 最終更新日: 2025-09-10)

主引用文献

Rencilin, C.F.,Chatterjee, A.,Ansari, M.Y.,Deshpande, S.,Mukherjee, S.,Singh, R.,Jayatheertha, S.B.,Reddy, P.M.,Hingankar, N.,Varadarajan, R.,Bhattacharya, J.,Dutta, S.
Cryo-EM reveals conformational variability in the SARS-CoV-2 spike protein RBD induced by two broadly neutralizing monoclonal antibodies.
Rsc Adv, 15:14385-14399, 2025

PubMed Abstract: SARS-CoV-2 spike proteins play a critical role in infection by interacting with the ACE2 receptors. Their receptor-binding domains and N-terminal domains exhibit remarkable flexibility and can adopt various conformations that facilitate receptor engagement. Previous structural studies have reported the RBD of the spike protein in "up", "down", and various intermediate states, as well as its different conformational changes during ACE2 binding. This flexibility also influences its interactions with the neutralizing antibodies, yet its role in the antibody complexes remains understudied. In this study, we used cryo-electron microscopy to investigate the structural properties of two broadly neutralizing monoclonal antibodies, THSC20.HVTR04 and THSC20.HVTR26. These antibodies were isolated from an unvaccinated individual and demonstrated potent neutralization of multiple SARS-CoV-2 variants. Our analysis revealed distinct binding characteristics and conformational changes in the spike RBD upon binding with the monoclonal antibodies. The structural characterization of the spike protein-monoclonal antibody complexes provided valuable insights into the structural variability of the spike protein and the possible mechanisms for antibody-mediated neutralization.

PubMed: 40330036
DOI: 10.1039/d5ra00373c

実験手法

ELECTRON MICROSCOPY (4.8 Å)