8R4J

Plastidial phosphorylase Pho1 from Solanum tuberosum in complex with caffeine

Summary for 8R4J

• Entry DOI: 10.2210/pdb8r4j/pdb
• Descriptor: Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic, GLYCEROL, CAFFEINE, ... (4 entities in total)
• Functional Keywords: plastidial phosphorylase, carbohydrate metabolism, transferase
• Biological source: Solanum tuberosum (potato)
• Total number of polymer chains: 3
• Total formula weight: 312495.76

Authors

Koulas, S.M.,Leonidas, D.D. (deposition date: 2023-11-13, release date: 2024-10-09, Last modification date: 2024-10-23)

Primary citation

Koulas, S.M.,Kyriakis, E.,Tsagkarakou, A.S.,Leonidas, D.D.
Kinetic and Structural Studies of the Plastidial Solanum tuberosum Phosphorylase.
Acs Omega, 9:41841-41854, 2024

PubMed Abstract: Kinetics and structural studies of the plastidial phosphorylase (Pho1) revealed that the most active form of the enzyme (Pho1ΔL78) is composed by two segments generated by proteolytic degradation of an approximately 65-residue-long peptide (L78) approximately in the middle of the Pho1 primary structure. Pho1ΔL78 is 1.5 times more active than the nonproteolyzed enzyme in solution and shows stronger specificity for glycogen, α-d-glucose, caffeine, and β-cyclodextrin than Pho1. The crystal structure of Pho1ΔL78 has been resolved at 2.2 Å resolution and revealed similarities and differences with the mammalian enzymes. The structural fold is conserved as is the active site, while other binding sites such as the inhibitor, the glycogen storage, the quercetin, and the allosteric are not. The binding of α-d-glucose, caffeine, and β-cyclodextrin to Pho1 has been studied by X-ray crystallography and revealed significant differences from those of the mammalian phosphorylases. As Pho1 is capable of catalyzing both starch synthesis and degradation, our studies suggest that the direction of Pho1 activity is regulated by the proteolytic degradation of the L78 peptide.

PubMed: 39398113
DOI: 10.1021/acsomega.4c06313

Experimental method

X-RAY DIFFRACTION (3.7 Å)