8PI7
DNA binding domain of HNF-1A bound to P2-HNF4A promoter DNA variant (P2 -169C>T)
Summary for 8PI7
| Entry DOI | 10.2210/pdb8pi7/pdb |
| Descriptor | Chains: E, Chains: F, Hepatocyte nuclear factor 1-alpha, ... (4 entities in total) |
| Functional Keywords | transcription factor, dna binding protein, gene transcription, hnf-1a, hnf4a, mody |
| Biological source | Homo sapiens (human) More |
| Total number of polymer chains | 4 |
| Total formula weight | 58705.80 |
| Authors | Kind, L.,Myllykoski, M.,Raasakka, A.,Kursula, P. (deposition date: 2023-06-21, release date: 2024-06-19) |
| Primary citation | Kind, L.,Molnes, J.,Tjora, E.,Raasakka, A.,Myllykoski, M.,Colclough, K.,Saint-Martin, C.,Adelfalk, C.,Dusatkova, P.,Pruhova, S.,Valtonen-Andre, C.,Bellanne-Chantelot, C.,Arnesen, T.,Kursula, P.,Njolstad, P.R. Molecular mechanism of HNF-1A-mediated HNF4A gene regulation and promoter-driven HNF4A-MODY diabetes. JCI Insight, 9:-, 2024 Cited by PubMed Abstract: Monogenic diabetes is a gateway to precision medicine through molecular mechanistic insight. Hepatocyte nuclear factor 1A (HNF-1A) and HNF-4A are transcription factors that engage in crossregulatory gene transcription networks to maintain glucose-stimulated insulin secretion in pancreatic β cells. Variants in the HNF1A and HNF4A genes are associated with maturity-onset diabetes of the young (MODY). Here, we explored 4 variants in the P2-HNF4A promoter region: 3 in the HNF-1A binding site and 1 close to the site, which were identified in 63 individuals from 21 families of different MODY disease registries across Europe. Our goal was to study the disease causality for these variants and to investigate diabetes mechanisms on the molecular level. We solved a crystal structure of HNF-1A bound to the P2-HNF4A promoter and established a set of techniques to probe HNF-1A binding and transcriptional activity toward different promoter variants. We used isothermal titration calorimetry, biolayer interferometry, x-ray crystallography, and transactivation assays, which revealed changes in HNF-1A binding or transcriptional activities for all 4 P2-HNF4A variants. Our results suggest distinct disease mechanisms of the promoter variants, which can be correlated with clinical phenotype, such as age of diagnosis of diabetes, and be important tools for clinical utility in precision medicine. PubMed: 38855865DOI: 10.1172/jci.insight.175278 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (3.2 Å) |
Structure validation
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