8OKB

SARS-CoV2 NSP5 in complex with a peptidomimetic ligand

Summary for 8OKB

Entry DOI	10.2210/pdb8okb/pdb
Related	7nwx 7nxh 8b0s 8b0t
Descriptor	3C-like proteinase nsp5, methyl (4~{S})-4-[[(2~{S})-4-methyl-2-(phenylmethoxycarbonylamino)pentanoyl]amino]-5-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]pentanoate (3 entities in total)
Functional Keywords	nsp5, sars-cov2, 3clpro, protac, viral protein
Biological source	Severe acute respiratory syndrome coronavirus 2
Total number of polymer chains	1
Total formula weight	34287.10
Authors	Calderone, V. (deposition date: 2023-03-28, release date: 2024-01-17, Last modification date: 2024-02-28)
Primary citation	Grifagni, D.,Lenci, E.,De Santis, A.,Orsetti, A.,Barracchia, C.G.,Tedesco, F.,Bellini Puglielli, R.,Lucarelli, F.,Lauriola, A.,Assfalg, M.,Cantini, F.,Calderone, V.,Guardavaccaro, D.,Trabocchi, A.,D'Onofrio, M.,Ciofi-Baffoni, S. Development of a GC-376 Based Peptidomimetic PROTAC as a Degrader of 3-Chymotrypsin-like Protease of SARS-CoV-2. Acs Med.Chem.Lett., 15:250-257, 2024 Cited by PubMed: 38352832 DOI: 10.1021/acsmedchemlett.3c00498 PDB entries with the same primary citation
Experimental method	X-RAY DIFFRACTION (2.31 Å)

Structure validation