8C68
CRYSTAL STRUCTURE OF ODORANT BINDING PROTEIN 4 FROM ANOPHELES GAMBIAE (AGAMOBP4) AT PH 4.6
Summary for 8C68
| Entry DOI | 10.2210/pdb8c68/pdb |
| Descriptor | AGAP010489-PA, ACETATE ION, SULFATE ION, ... (4 entities in total) |
| Functional Keywords | odorant binding protein (obp), mosquito, olfaction, transport protein |
| Biological source | Anopheles gambiae (African malaria mosquito) |
| Total number of polymer chains | 1 |
| Total formula weight | 14513.86 |
| Authors | Tsitsanou, K.E.,Drakou, C.E.,Zographos, S.E. (deposition date: 2023-01-11, release date: 2023-07-05, Last modification date: 2024-10-16) |
| Primary citation | Mam, B.,Tsitsanou, K.E.,Liggri, P.G.V.,Saitta, F.,Stamati, E.C.V.,Mahita, J.,Leonis, G.,Drakou, C.E.,Papadopoulos, M.,Arnaud, P.,Offmann, B.,Fessas, D.,Sowdhamini, R.,Zographos, S.E. Influence of pH on indole-dependent heterodimeric interactions between Anopheles gambiae odorant-binding proteins OBP1 and OBP4. Int.J.Biol.Macromol., 245:125422-125422, 2023 Cited by PubMed Abstract: Insect Odorant Binding Proteins (OBPs) constitute important components of their olfactory apparatus, as they are essential for odor recognition. OBPs undergo conformational changes upon pH change, altering their interactions with odorants. Moreover, they can form heterodimers with novel binding characteristics. Anopheles gambiae OBP1 and OBP4 were found capable of forming heterodimers possibly involved in the specific perception of the attractant indole. In order to understand how these OBPs interact in the presence of indole and to investigate the likelihood of a pH-dependent heterodimerization mechanism, the crystal structures of OBP4 at pH 4.6 and 8.5 were determined. Structural comparison to each other and with the OBP4-indole complex (3Q8I, pH 6.85) revealed a flexible N-terminus and conformational changes in the α4-loop-α5 region at acidic pH. Fluorescence competition assays showed a weak binding of indole to OBP4 that becomes further impaired at acidic pH. Additional Molecular Dynamic and Differential Scanning Calorimetry studies displayed that the influence of pH on OBP4 stability is significant compared to the modest effect of indole. Furthermore, OBP1-OBP4 heterodimeric models were generated at pH 4.5, 6.5, and 8.5, and compared concerning their interface energy and cross-correlated motions in the absence and presence of indole. The results indicate that the increase in pH may induce the stabilization of OBP4 by increasing its helicity, thereby enabling indole binding at neutral pH that further stabilizes the protein and possibly promotes the creation of a binding site for OBP1. A decrease in interface stability and loss of correlated motions upon transition to acidic pH may provoke the heterodimeric dissociation allowing indole release. Finally, we propose a potential OBP1-OBP4 heterodimer formation/disruption mechanism induced by pH change and indole binding. PubMed: 37330089DOI: 10.1016/j.ijbiomac.2023.125422 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (2.05 Å) |
Structure validation
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