7ZH3

USP1 bound to ubiquitin conjugated to FANCD2 (focused refinement)

7ZH3 の概要

• エントリーDOI: 10.2210/pdb7zh3/pdb
• EMDBエントリー: 14719 14720 14721 14722
• 分子名称: Ubiquitin-60S ribosomal protein L40, Ubiquitin carboxyl-terminal hydrolase 1, ZINC ION, ... (4 entities in total)
• 機能のキーワード: deubiquitinase, complex, enzyme-substrate, hydrolase
• 由来する生物種: Homo sapiens (human); 詳細
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 97330.81

構造登録者

Rennie, M.L.,Walden, H. (登録日: 2022-04-05, 公開日: 2022-10-12, 最終更新日: 2024-07-24)

主引用文献

Rennie, M.L.,Arkinson, C.,Chaugule, V.K.,Walden, H.
Cryo-EM reveals a mechanism of USP1 inhibition through a cryptic binding site.
Sci Adv, 8:eabq6353-eabq6353, 2022

PubMed Abstract: Repair of DNA damage is critical to genomic integrity and frequently disrupted in cancers. Ubiquitin-specific protease 1 (USP1), a nucleus-localized deubiquitinase, lies at the interface of multiple DNA repair pathways and is a promising drug target for certain cancers. Although multiple inhibitors of this enzyme, including one in phase 1 clinical trials, have been established, their binding mode is unknown. Here, we use cryo-electron microscopy to study an assembled enzyme-substrate-inhibitor complex of USP1 and the well-established inhibitor, ML323. Achieving 2.5-Å resolution, with and without ML323, we find an unusual binding mode in which the inhibitor disrupts part of the hydrophobic core of USP1. The consequent conformational changes in the secondary structure lead to subtle rearrangements in the active site that underlie the mechanism of inhibition. These structures provide a platform for structure-based drug design targeting USP1.

PubMed: 36170365
DOI: 10.1126/sciadv.abq6353

実験手法

ELECTRON MICROSCOPY (2.5 Å)