7YGA

Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the second-step self-splicing

7YGA の概要

• エントリーDOI: 10.2210/pdb7yga/pdb
• EMDBエントリー: 33813
• 分子名称: RNA (5'-R(*UP*CP*GP*(SSU)P*AP*AP*CP*C)-3'), RNA (5'-R(*CP*CP*CP*UP*CP*U)-3'), RNA (393-MER), ... (4 entities in total)
• 機能のキーワード: tetrahymena ribozyme, second step of self-splicing, conformation 2, rna
• 由来する生物種: Tetrahymena; 詳細
• タンパク質・核酸の鎖数: 3
• 化学式量合計: 131497.03

構造登録者

Li, S.,Michael, Z.P.,Zhang, X.,Greg, P.,Zhang, K. (登録日: 2022-07-11, 公開日: 2023-03-29, 最終更新日: 2025-07-02)

主引用文献

Li, S.,Palo, M.Z.,Zhang, X.,Pintilie, G.,Zhang, K.
Snapshots of the second-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM.
Nat Commun, 14:1294-1294, 2023

PubMed Abstract: Group I introns are catalytic RNAs that coordinate two consecutive transesterification reactions for self-splicing. To understand how the group I intron promotes catalysis and coordinates self-splicing reactions, we determine the structures of L-16 Tetrahymena ribozyme in complex with a 5'-splice site analog product and a 3'-splice site analog substrate using cryo-EM. We solve six conformations from a single specimen, corresponding to different splicing intermediates after the first ester-transfer reaction. The structures reveal dynamics during self-splicing, including large conformational changes of the internal guide sequence and the J5/4 junction as well as subtle rearrangements of active-site metals and the hydrogen bond formed between the 2'-OH group of A261 and the N2 group of guanosine substrate. These results help complete a detailed structural and mechanistic view of this paradigmatic group I intron undergoing the second step of self-splicing.

PubMed: 36928031
DOI: 10.1038/s41467-023-36724-5

実験手法

ELECTRON MICROSCOPY (2.35 Å)