7X4L

Crystal structure of Bacteroides thetaiotaomicron glutamate decarboxylase mutant Y303F-PLP complex

Summary for 7X4L

• Entry DOI: 10.2210/pdb7x4l/pdb
• Descriptor: Glutamate decarboxylase, PYRIDOXAL-5'-PHOSPHATE (3 entities in total)
• Functional Keywords: plp, complex, neutral, biosynthetic protein
• Biological source: Bacteroides thetaiotaomicron VPI-5482
• Total number of polymer chains: 6
• Total formula weight: 330869.92

Authors

Liu, S.,Guoming, D.,Yulu, W.,Boting, W.,Xin, F. (deposition date: 2022-03-02, release date: 2023-05-03, Last modification date: 2023-11-29)

Primary citation

Liu, S.,Wen, B.,Du, G.,Wang, Y.,Ma, X.,Yu, H.,Zhang, J.,Fan, S.,Zhou, H.,Xin, F.
Coordinated regulation of Bacteroides thetaiotaomicron glutamate decarboxylase activity by multiple elements under different pH.
Food Chem, 403:134436-134436, 2023

PubMed Abstract: Glutamate decarboxylase catalyzes the conversion of glutamate to γ-aminobutyric acid, which plays a vital role in the gut-brain axis. Herein, a novel glutamate decarboxylase from Bacteroides thetaiotaomicron (BTGAD) was heterologously expressed. BTGAD possessed high catalytic efficiency at 60℃ and pH 3.6. As pH response, N-terminal sequence (NTS), C-terminal sequence (CTS), and β-hairpin in BTGAD coordinately regulated its activity under different pH. NTS folded into a loop under acidic pH, and the truncation of NTS severely reduced its activity to 4.2%. While CTS occupied the active site under neutral pH and became disordered to release the inhibition effect under acidic conditions. The β-hairpin, located near the active site, swung and formed open and closed conformations, which acted as an activity switch. This study provides the molecular basis for the coordinated regulation mechanism of BTGAD and lays a theoretical foundation for understanding the metabolism of dietary glutamate and its interaction relationships with the gut-brain axis.

PubMed: 36358099
DOI: 10.1016/j.foodchem.2022.134436

Experimental method

X-RAY DIFFRACTION (2.59 Å)