7WIN

Crystal structure of BAZ2B TAM domain

7WIN の概要

• エントリーDOI: 10.2210/pdb7win/pdb
• 分子名称: Bromodomain adjacent to zinc finger domain protein 2B (2 entities in total)
• 機能のキーワード: tam domain, baz2b, dna binding protein
• 由来する生物種: Homo sapiens (human)
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 26534.34

構造登録者

Feng, Y.Y.,Liu, K.,Min, J.R. (登録日: 2022-01-04, 公開日: 2022-02-02, 最終更新日: 2024-10-23)

主引用文献

Feng, Y.,Chen, S.,Zhou, M.,Zhang, J.,Min, J.,Liu, K.
Crystal structure of the BAZ2B TAM domain.
Heliyon, 8:e09873-e09873, 2022

PubMed Abstract: BAZ2B is a regulatory subunit of the ISWI (Imitation Switch) remodeling complex and engages in nucleosome remodeling. Loss-of-function and haploinsufficiency of BAZ2B are associated with different diseases. BAZ2B is a large multidomain protein. In addition to the epigenetic reader domains plant homeodomain (PHD) and bromodomain (BRD), BAZ2B also has a Tip5/ARBP/MBD (TAM) domain. Sequence alignment revealed that the TAM domains of BAZ2A and BAZ2B share 53% sequence identity. How the BAZ2A TAM domain bound with DNA has been characterized recently, however, the DNA binding ability and methylation preference, as well as the structural basis of the BAZ2B TAM domain are not studied yet. In this study, we measured the DNA binding affinity of the TAM domain of BAZ2B, and also determined its apo crystal structure. We found that the TAM domains of BAZ2A and BAZ2B adopt almost the same fold, and like BAZ2A, the BAZ2B TAM domain also binds to dsDNA without methyl-cytosine preference, implying that the BAZ2B TAM domain might recognize DNA in a similar binding mode to that of the BAZ2A TAM domain. These results provide clues for the biological function study of BAZ2B in the future.

PubMed: 35865993
DOI: 10.1016/j.heliyon.2022.e09873

実験手法

X-RAY DIFFRACTION (1.95 Å)