7W8A

Babesia orientalis lactate dehydrogenase, BoLDH apo

「7ELO」から置き換えられました

7W8A の概要

• エントリーDOI: 10.2210/pdb7w8a/pdb
• 分子名称: lactate dehydrogenase (1 entity in total)
• 機能のキーワード: lactate dehydrogenase, anaerobic glycolysis, oxidoreductase
• 由来する生物種: Babesia orientalis
• タンパク質・核酸の鎖数: 8
• 化学式量合計: 283584.50

構造登録者

Yu, L. (登録日: 2021-12-07, 公開日: 2021-12-22, 最終更新日: 2023-11-29)

主引用文献

Yu, L.,Liu, Q.,Luo, W.,Zhao, J.,Alzan, H.F.,He, L.
The Structural Basis of Babesia orientalis Lactate Dehydrogenase.
Front Cell Infect Microbiol, 11:790101-790101, 2021

PubMed Abstract: Glycolytic enzymes play a crucial role in the anaerobic glycolysis of apicomplexan parasites for energy generation. Consequently, they are considered as potential targets for new drug development. Previous studies revealed that lactate dehydrogenase (LDH), a glycolytic enzyme, is a potential drug target in different parasites, such as , , , and . Herein, in order to investigate the structural basis of LDH in spp., we determined the crystal structure of apo (Bo) LDH at 2.67-Å resolution in the space group 1. A five-peptide insertion appears in the active pocket loop of BoLDH to create a larger catalytic pocket, like other protozoa (except for LDH) and unlike its mammalian counterparts, and the absence of this extra insertion inactivates BoLDH. Without ligands, the apo BoLDH takes R-state (relaxed) with the active-site loop open. This feature is obviously different from that of allosteric LDHs in T-state (tense) with the active-site loop open. Compared with allosteric LDHs, the extra salt bridges and hydrogen bonds make the subunit interfaces of BoLDH more stable, and that results in the absence of T-state. Interestingly, BoLDH differs significantly from BmLDH, as it exhibits the ability to adapt quickly to the synthetic co-factor APAD. In addition, the enzymatic activity of BoLDH was inhibited non-competitively by polyphenolic gossypol with a value of 4.25 μM, indicating that BoLDH is sensitive to the inhibition of gossypol and possibly to its new derivative compounds. The current work provides the structural basis of BoLDH for the first time and suggests further investigation on the LDH structure of other spp. That knowledge would indeed facilitate the screening and designing of new LDH inhibitors to control the intracellular proliferation of spp.

PubMed: 35071043
DOI: 10.3389/fcimb.2021.790101

実験手法

X-RAY DIFFRACTION (2.671 Å)