7W5I

The structure of trichobrasilenol synthase TaTC6 in complex with FPP-1

7W5I の概要

• エントリーDOI: 10.2210/pdb7w5i/pdb
• 分子名称: Terpene cyclase 6, FARNESYL DIPHOSPHATE, MALONATE ION, ... (6 entities in total)
• 機能のキーワード: trichobrasilenol synthase, trichoderma, sesquiterpene cyclase, farnesyl diphosphate, metal binding protein, lyase-metal binding protein complex, lyase/metal binding protein
• 由来する生物種: Trichoderma atroviride
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 93096.57

構造登録者

Chen, C.,Wang, T.,Yang, Y.,Zhang, L.,Ko, T.,Huang, J.,Guo, R. (登録日: 2021-11-30, 公開日: 2022-06-01, 最終更新日: 2023-11-29)

主引用文献

Wang, T.,Yang, Y.,He, M.,Liu, M.,Huang, J.W.,Min, J.,Chen, C.C.,Liu, Y.,Zhang, L.,Guo, R.T.
Structural insights into the cyclization of unusual brasilane-type sesquiterpenes.
Int.J.Biol.Macromol., 209:1784-1791, 2022

PubMed Abstract: The biosynthesis of brasilane-type sesquiterpenoids (BTSs) attracts much attention owing to their unique skeleton of 5/6 bicyclic structure that contains five Me groups. Here, the crystal structures of a BTS cyclase TaTC6 from Trichoderma atroviride FKI-3849 and its complexes with farnesyl pyrophosphate (FPP) and analogue were reported. These structural information reveal that TaTC6 exploits a hydrophobic pocket to constrain the hydrocarbon region of FPP in a "U-shape" to facilitate the initial C1-C11 bond formation after pyrophosphate ionization. Following, four carbocations of reaction intermediates were molecularly docked into the hydrophobic pocket to reveal critical residues involved in the cyclization cascade. Finally, an S239-stabilized water molecule that is 3.9 Å away from the C8 of the last allyl cation may conduct hydration to quench the reaction cascade. Mutating S239 to alanine led to ca. 40% reduction in activity compared with the wild-type enzyme. The conservation of the residues that constitute the hydrophobic pocket is also discussed. Overall, this study will give an insight into the mechanism of how the active site of STCs constrain the conformation of the flexible FPP and series allylic carbocations for the complicated-ring formation and unusual carbon rearrangement in the biosynthesis of BTSs.

PubMed: 35504416
DOI: 10.1016/j.ijbiomac.2022.04.150

実験手法

X-RAY DIFFRACTION (2.13 Å)