7UG7

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

これはPDB形式変換不可エントリーです。

7UG7 の概要

• エントリーDOI: 10.2210/pdb7ug7/pdb
• 関連するPDBエントリー: 7OTC
• EMDBエントリー: 13058 26486
• 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... (67 entities in total)
• 機能のキーワード: translocation, ef-g, argyrin, ribosome
• 由来する生物種: Escherichia coli K-12; 詳細
• タンパク質・核酸の鎖数: 60
• 化学式量合計: 2354273.41

構造登録者

Rundlet, E.J.,Wieland, M.,Holm, M.,Koller, T.O.,Blanchard, S.C.,Wilson, D.N. (登録日: 2022-03-24, 公開日: 2022-05-18, 最終更新日: 2025-03-19)

主引用文献

Wieland, M.,Holm, M.,Rundlet, E.J.,Morici, M.,Koller, T.O.,Maviza, T.P.,Pogorevc, D.,Osterman, I.A.,Muller, R.,Blanchard, S.C.,Wilson, D.N.
The cyclic octapeptide antibiotic argyrin B inhibits translation by trapping EF-G on the ribosome during translocation.
Proc.Natl.Acad.Sci.USA, 119:e2114214119-e2114214119, 2022

PubMed Abstract: Argyrins are a family of naturally produced octapeptides that display promising antimicrobial activity against Pseudomonas aeruginosa. Argyrin B (ArgB) has been shown to interact with an elongated form of the translation elongation factor G (EF-G), leading to the suggestion that argyrins inhibit protein synthesis by interfering with EF-G binding to the ribosome. Here, using a combination of cryo-electron microscopy (cryo-EM) and single-molecule fluorescence resonance energy transfer (smFRET), we demonstrate that rather than interfering with ribosome binding, ArgB rapidly and specifically binds EF-G on the ribosome to inhibit intermediate steps of the translocation mechanism. Our data support that ArgB inhibits conformational changes within EF-G after GTP hydrolysis required for translocation and factor dissociation, analogous to the mechanism of fusidic acid, a chemically distinct antibiotic that binds a different region of EF-G. These findings shed light on the mechanism of action of the argyrin-class antibiotics on protein synthesis as well as the nature and importance of rate-limiting, intramolecular conformational events within the EF-G-bound ribosome during late-steps of translocation.

PubMed: 35500116
DOI: 10.1073/pnas.2114214119

実験手法

ELECTRON MICROSCOPY (2.58 Å)