7T9F

Structure of VcINDY-apo

7T9F の概要

• エントリーDOI: 10.2210/pdb7t9f/pdb
• EMDBエントリー: 25756
• 分子名称: DASS family sodium-coupled anion symporter (1 entity in total)
• 機能のキーワード: transporter, membrane protein
• 由来する生物種: Vibrio cholerae
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 96314.72

構造登録者

Sauer, D.B.,Marden, J.J.,Song, J.M.,Wang, D.N. (登録日: 2021-12-19, 公開日: 2022-05-25, 最終更新日: 2024-02-28)

主引用文献

Sauer, D.B.,Marden, J.J.,Sudar, J.C.,Song, J.,Mulligan, C.,Wang, D.N.
Structural basis of ion - substrate coupling in the Na + -dependent dicarboxylate transporter VcINDY.
Nat Commun, 13:2644-2644, 2022

PubMed Abstract: The Na-dependent dicarboxylate transporter from Vibrio cholerae (VcINDY) is a prototype for the divalent anion sodium symporter (DASS) family. While the utilization of an electrochemical Na gradient to power substrate transport is well established for VcINDY, the structural basis of this coupling between sodium and substrate binding is not currently understood. Here, using a combination of cryo-EM structure determination, succinate binding and site-directed cysteine alkylation assays, we demonstrate that the VcINDY protein couples sodium- and substrate-binding via a previously unseen cooperative mechanism by conformational selection. In the absence of sodium, substrate binding is abolished, with the succinate binding regions exhibiting increased flexibility, including HPb, TM10b and the substrate clamshell motifs. Upon sodium binding, these regions become structurally ordered and create a proper binding site for the substrate. Taken together, these results provide strong evidence that VcINDY's conformational selection mechanism is a result of the sodium-dependent formation of the substrate binding site.

PubMed: 35551191
DOI: 10.1038/s41467-022-30406-4

実験手法

ELECTRON MICROSCOPY (3.23 Å)